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Changlei Han
Publications - 5
Citations - 5964
Changlei Han is an academic researcher. The author has contributed to research in topics: Genome & Foxtail. The author has an hindex of 5, co-authored 5 publications receiving 4976 citations.
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Journal ArticleDOI
SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler
Ruibang Luo,Binghang Liu,Yinlong Xie,Yinlong Xie,Zhenyu Li,Weihua Huang,Jianying Yuan,Guangzhu He,Yanxiang Chen,Qi Pan,Yunjie Liu,Jingbo Tang,Gengxiong Wu,Hao Zhang,Yujian Shi,Yong Liu,Chang Yu,Bo Wang,Yao Lu,Changlei Han,David W. Cheung,Siu-Ming Yiu,Shaoliang Peng,Zhu Xiao-qian,Guangming Liu,Xiangke Liao,Yingrui Li,Huanming Yang,Jian Wang,Tak-Wah Lam,Jun Wang +30 more
TL;DR: This work provides an updated assembly version of the 2008 Asian genome using SOAPdenovo2, a new algorithm design that reduces memory consumption in graph construction, resolves more repeat regions in contig assembly, increases coverage and length in scaffold construction, improves gap closing, and optimizes for large genome.
Journal ArticleDOI
Genome sequence of foxtail millet ( Setaria italica ) provides insights into grass evolution and biofuel potential
Gengyun Zhang,Xin Liu,Zhiwu Quan,Shifeng Cheng,Xun Xu,Shengkai Pan,Min Xie,Peng Zeng,Zhen Yue,Wenliang Wang,Ye Tao,Chao Bian,Changlei Han,Qiuju Xia,Xiaohua Peng,Rui Cao,Xinhua Yang,Dongliang Zhan,Jingchu Hu,Yinxin Zhang,Henan Li,Li Hua,Ning Li,Junyi Wang,Chanchan Wang,Renyi Wang,Tao Guo,Cai Yanjie,Chengzhang Liu,Haitao Xiang,Qiuxiang Shi,Huang Ping,Qingchun Chen,Yingrui Li,Jun Wang,Zhao Zhihai,Jian Wang +36 more
TL;DR: A draft genome anchored onto nine chromosomes and annotated 38,801 genes was produced and key chromosome reshuffling events were detected through collinearity identification between foxtail millet, rice and sorghum.
Journal ArticleDOI
Genome sequencing reveals insights into physiology and longevity of the naked mole rat
Eun Bae Kim,Xiaodong Fang,Alexey A. Fushan,Zhiyong Huang,Alexei Lobanov,Lijuan Han,Stefano M. Marino,Xiaoqing Sun,Anton A. Turanov,Pengcheng Yang,Sun Hee Yim,Xiang Zhao,Marina V. Kasaikina,Nina Stoletzki,Chunfang Peng,Paz Polak,Zhiqiang Xiong,Adam Kiezun,Yabing Zhu,Yuanxin Chen,Gregory V. Kryukov,Qiang Zhang,Leonid Peshkin,Lan Yang,Roderick T. Bronson,Rochelle Buffenstein,Bo Wang,Changlei Han,Qiye Li,Li Chen,Wei Zhao,Shamil R. Sunyaev,Thomas J. Park,Guojie Zhang,Jun Wang,Vadim N. Gladyshev +35 more
TL;DR: The sequencing and analysis of the naked mole rat genome is reported, which reveals unique genome features and molecular adaptations consistent with cancer resistance, poikilothermy, hairlessness and insensitivity to low oxygen, and altered visual function, circadian rythms and taste sensing.
Journal ArticleDOI
The genome of Prunus mume
Qixiang Zhang,Wenbin Chen,Lidan Sun,Fangying Zhao,Bangqing Huang,Weiru Yang,Ye Tao,Jia Wang,Zhiqiong Yuan,Guangyi Fan,Zhen Xing,Changlei Han,Huitang Pan,Xiao Zhong,Wenfang Shi,Xinming Liang,Dongliang Du,Fengming Sun,Zongda Xu,Ruijie Hao,Tian Lv,Yingmin Lv,Zheng Zequn,Ming Sun,Le Luo,Ming Cai,Yike Gao,Junyi Wang,Ye Yin,Xun Xu,Tangren Cheng,Jun Wang +31 more
TL;DR: This work assemble a 280M genome by combining 101-fold next-generation sequencing and optical mapping data, and succeeds in reconstructing nine ancestral chromosomes of Rosaceae family, as well as depicting chromosome fusion, fission and duplication history in three major subfamilies.
Journal ArticleDOI
Erratum to "SOAPdenovo2: An empirically improved memory-efficient short-read de novo assembler" [GigaScience, (2012), 1, 18]
Ruibang Luo,Binghang Liu,Yinlong Xie,Zhenyu Li,Weihua Huang,Jianying Yuan,Guangzhu He,Yanxiang Chen,Qi Pan,Yunjie Liu,Jingbo Tang,Gengxiong Wu,Hao Zhang,Yujian Shi,Yong Liu,Chang Yu,Bo Wang,Yao Lu,Changlei Han,David W. Cheung,Siu-Ming Yiu,Shaoliang Peng,Zhu Xiao-qian,Guangming Liu,Xiangke Liao,Yingrui Li,Huanming Yang,Jian Wang,Tak-Wah Lam,Jun Wang +29 more
TL;DR: This research presents a novel probabilistic approach to estimating the response of the immune system to laser-spot assisted, 3D image recognition.