Y
Yunjie Liu
Publications - 5
Citations - 6291
Yunjie Liu is an academic researcher. The author has contributed to research in topics: Sequence assembly & Shotgun sequencing. The author has an hindex of 3, co-authored 4 publications receiving 5305 citations.
Papers
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Journal ArticleDOI
SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler
Ruibang Luo,Binghang Liu,Yinlong Xie,Yinlong Xie,Zhenyu Li,Weihua Huang,Jianying Yuan,Guangzhu He,Yanxiang Chen,Qi Pan,Yunjie Liu,Jingbo Tang,Gengxiong Wu,Hao Zhang,Yujian Shi,Yong Liu,Chang Yu,Bo Wang,Yao Lu,Changlei Han,David W. Cheung,Siu-Ming Yiu,Shaoliang Peng,Zhu Xiao-qian,Guangming Liu,Xiangke Liao,Yingrui Li,Huanming Yang,Jian Wang,Tak-Wah Lam,Jun Wang +30 more
TL;DR: This work provides an updated assembly version of the 2008 Asian genome using SOAPdenovo2, a new algorithm design that reduces memory consumption in graph construction, resolves more repeat regions in contig assembly, increases coverage and length in scaffold construction, improves gap closing, and optimizes for large genome.
Journal ArticleDOI
The oyster genome reveals stress adaptation and complexity of shell formation
Guofan Zhang,Xiaodong Fang,Ximing Guo,Li Li,Ruibang Luo,Fei Xu,Pengcheng Yang,Linlin Zhang,Xiaotong Wang,Haigang Qi,Zhiqiang Xiong,Huayong Que,Yinlong Xie,Peter W. H. Holland,Jordi Paps,Yabing Zhu,Fucun Wu,Yuanxin Chen,Jiafeng Wang,Chunfang Peng,Jie Meng,Lan Yang,Jun Liu,Bo Wen,Na Zhang,Zhiyong Huang,Qihui Zhu,Yue Feng,Andrew S. Mount,Dennis Hedgecock,Zhe Xu,Yunjie Liu,Tomislav Domazet-Lošo,Yishuai Du,Xiaoqing Sun,Shoudu Zhang,Binghang Liu,Peizhou Cheng,Xuanting Jiang,Juan Li,Dingding Fan,Wei Wang,Wenjing Fu,Tong Wang,Bo Wang,Jibiao Zhang,Zhiyu Peng,Yingxiang Li,Na Li,Jinpeng Wang,Maoshan Chen,Yan He,Fengji Tan,Xiaorui Song,Qiumei Zheng,Ronglian Huang,Hailong Yang,Du Xuedi,Li Chen,Mei Yang,Patrick M. Gaffney,Shan Wang,Longhai Luo,Zhicai She,Yao Ming,Huang Wen,Shu Zhang,Baoyu Huang,Yong Zhang,Tao Qu,Peixiang Ni,Guoying Miao,Junyi Wang,Qiang Wang,Christian E. W. Steinberg,Haiyan Wang,Ning Li,Lumin Qian,Guojie Zhang,Yingrui Li,Huanming Yang,Xiao Liu,Jian Wang,Ye Yin,Jun Wang +84 more
TL;DR: The sequencing and assembly of the oyster genome using short reads and a fosmid-pooling strategy and transcriptomes of development and stress response and the proteome of the shell are reported, showing that shell formation in molluscs is more complex than currently understood and involves extensive participation of cells and their exosomes.
Journal ArticleDOI
Erratum to "SOAPdenovo2: An empirically improved memory-efficient short-read de novo assembler" [GigaScience, (2012), 1, 18]
Ruibang Luo,Binghang Liu,Yinlong Xie,Zhenyu Li,Weihua Huang,Jianying Yuan,Guangzhu He,Yanxiang Chen,Qi Pan,Yunjie Liu,Jingbo Tang,Gengxiong Wu,Hao Zhang,Yujian Shi,Yong Liu,Chang Yu,Bo Wang,Yao Lu,Changlei Han,David W. Cheung,Siu-Ming Yiu,Shaoliang Peng,Zhu Xiao-qian,Guangming Liu,Xiangke Liao,Yingrui Li,Huanming Yang,Jian Wang,Tak-Wah Lam,Jun Wang +29 more
TL;DR: This research presents a novel probabilistic approach to estimating the response of the immune system to laser-spot assisted, 3D image recognition.
Variational quantum circuit learning of entanglement purification in multi-degree-of-freedom
TL;DR: A variational quantum circuit framework is proposed and its feasibility of learning optimal protocols of EP in multi-degree-of-freedom (DoF) is demonstrated, by innovatively introducing the additional circuit lines for representing the ancillary DoFs.
Patent
Method and system for assembly of genome
TL;DR: In this article, the authors presented a method and a system for assembly of genome using whole-genome shotgun sequencing with Fosmid-to-Fosmid for sequencing and hierarchical assembly has also been used to improve the accuracy of the assembly.