D
David H. Kavanagh
Researcher at Icahn School of Medicine at Mount Sinai
Publications - 10
Citations - 2527
David H. Kavanagh is an academic researcher from Icahn School of Medicine at Mount Sinai. The author has contributed to research in topics: Gene & Exome. The author has an hindex of 10, co-authored 10 publications receiving 1759 citations. Previous affiliations of David H. Kavanagh include Mount Sinai Hospital.
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Journal ArticleDOI
Gene expression elucidates functional impact of polygenic risk for schizophrenia
Menachem Fromer,Panos Roussos,Solveig K. Sieberts,Jessica S. Johnson,David H. Kavanagh,Thanneer M. Perumal,Douglas M. Ruderfer,Edwin C. Oh,Aaron Topol,Hardik Shah,Lambertus Klei,Robin Kramer,Dalila Pinto,Zeynep H. Gümüş,A. Ercument Cicek,Kristen K. Dang,Andrew W. Browne,Cong Lu,Lu Xie,Ben Readhead,Eli A. Stahl,Jianqiu Xiao,Mahsa Parvisi,Tymor Hamamsy,John F. Fullard,Ying-Chih Wang,Milind Mahajan,Jonathan M. J. Derry,Joel T. Dudley,Scott E. Hemby,Benjamin A. Logsdon,Konrad Talbot,Towfique Raj,Towfique Raj,David A. Bennett,Philip L. De Jager,Philip L. De Jager,Jun Zhu,Bin Zhang,Patrick F. Sullivan,Patrick F. Sullivan,Andrew Chess,Shaun Purcell,Leslie A. Shinobu,Lara M. Mangravite,Hiroyoshi Toyoshiba,Raquel E. Gur,Chang-Gyu Hahn,David A. Lewis,Vahram Haroutunian,Mette A. Peters,Barbara K. Lipska,Joseph D. Buxbaum,Eric E. Schadt,Keisuke Hirai,Kathryn Roeder,Kristen J. Brennand,Nicholas Katsanis,Enrico Domenici,Bernie Devlin,Pamela Sklar +60 more
TL;DR: It is shown that schizophrenia is polygenic and the utility of this resource of gene expression and its genetic regulation for mechanistic interpretations of genetic liability for brain diseases is highlighted.
Journal ArticleDOI
The ExAC browser: displaying reference data information from over 60 000 exomes
Konrad J. Karczewski,Ben Weisburd,Brett Thomas,Brett Thomas,Matthew Solomonson,Matthew Solomonson,Douglas M. Ruderfer,David H. Kavanagh,Tymor Hamamsy,Monkol Lek,Monkol Lek,Kaitlin E. Samocha,Kaitlin E. Samocha,Beryl B. Cummings,Beryl B. Cummings,Daniel P. Birnbaum,Daniel P. Birnbaum,Mark J. Daly,Mark J. Daly,Daniel G. MacArthur,Daniel G. MacArthur +20 more
TL;DR: The ExAC browser provides gene- and transcript-centric displays of variation, a critical view for clinical applications, and provides a variant display, which includes population frequency and functional annotation data as well as short read support for the called variant.
Journal ArticleDOI
The PsychENCODE project
Schahram Akbarian,Chunyu Liu,James A. Knowles,Flora M. Vaccarino,Peggy J. Farnham,Gregory E. Crawford,Andrew E. Jaffe,Dalila Pinto,Stella Dracheva,Daniel H. Geschwind,Jonathan Mill,Jonathan Mill,Angus C. Nairn,Alexej Abyzov,Sirisha Pochareddy,Shyam Prabhakar,Sherman M. Weissman,Patrick F. Sullivan,Matthew W. State,Zhiping Weng,Mette A. Peters,Kevin P. White,Mark Gerstein,Anahita Amiri,Chris Armoskus,Allison E. Ashley-Koch,Taejeong Bae,Andrea Beckel-Mitchener,Benjamin P. Berman,Gerhard A. Coetzee,Gianfilippo Coppola,Nancy Francoeur,Menachem Fromer,Robert Gao,Kay Grennan,Jennifer Herstein,David H. Kavanagh,Nikolay A. Ivanov,Yan Jiang,Robert R. Kitchen,Alexey Kozlenkov,Marija Kundakovic,Mingfeng Li,Zhen Li,Shuang Liu,Lara M. Mangravite,Eugenio Mattei,Eirene Markenscoff-Papadimitriou,Fabio C. P. Navarro,Nicole North,Larsson Omberg,David M. Panchision,Neelroop N. Parikshak,Jeremie Poschmann,Amanda J. Price,Michael J. Purcaro,Timothy E. Reddy,Panos Roussos,Shannon Schreiner,Soraya Scuderi,Robert Sebra,Mikihito Shibata,Annie W. Shieh,Mario Skarica,Wenjie Sun,Vivek Swarup,Amber Thomas,Junko Tsuji,Harm van Bakel,Daifeng Wang,Yongjun Wang,Kai Wang,Donna M. Werling,A. Jeremy Willsey,Heather Witt,Hyejung Won,Chloe C. Y. Wong,Chloe C. Y. Wong,Gregory A. Wray,Emily Wu,Xuming Xu,Lijing Yao,Geetha Senthil,Thomas Lehner,Pamela Sklar,Nenad Sestan +85 more
TL;DR: The PsychENCODE project aims to produce a public resource of multidimensional genomic data using tissue- and cell type–specific samples from approximately 1,000 phenotypically well-characterized, high-quality healthy and disease-affected human post-mortem brains, as well as functionally characterize disease-associated regulatory elements and variants in model systems.
Posted ContentDOI
Gene Expression Elucidates Functional Impact of Polygenic Risk for Schizophrenia
Menachem Fromer,Panos Roussos,Solveig K. Sieberts,Jessica S. Johnson,David H. Kavanagh,Thanneer M. Perumal,Douglas M. Ruderfer,Edwin C. Oh,Aaron Topol,Hardik Shah,Lambertus Klei,Robin Kramer,Dalila Pinto,Zeynep H. Gümüş,A. Ercument Cicek,Kristen K. Dang,Andrew W. Browne,Cong Lu,Li Xie,Ben Readhead,Eli A. Stahl,Mahsa Parvisi,Tymor Hamamsy,John F. Fullard,Ying-Chih Wang,Milind Mahajan,Jonathan M. J. Derry,Joel T. Dudley,Scott E. Hemby,Benjamin A. Logsdon,Konrad Talbot,Towfique Raj,David A. Bennett,Philip L. De Jager,Jun Zhu,Bin Zhang,Patrick F. Sullivan,Andrew Chess,Shaun Purcell,Leslie A. Shinobu,Lara M. Mangravite,Hiroyoshi Toyoshiba,Raquel E. Gur,Chang-Gyu Hahn,David A. Lewis,Vahram Haroutonian,Mette A. Peters,Barbara K. Lipska,Joseph D. Buxbaum,Eric E. Schadt,Keisuke Hirai,Kathryn Roeder,Kristen J. Brennand,Nicholas Katsanis,Enrico Domenici,Bernie Devlin,Pamela Sklar +56 more
TL;DR: Co-expression analyses identify a gene module that shows enrichment for genetic associations and is thus relevant for schizophrenia, paving the way for mechanistic interpretations of genetic liability for schizophrenia and other brain diseases.
Journal ArticleDOI
Patterns of genic intolerance of rare copy number variation in 59,898 human exomes.
Douglas M. Ruderfer,Tymor Hamamsy,Monkol Lek,Konrad J. Karczewski,Konrad J. Karczewski,David H. Kavanagh,Kaitlin E. Samocha,Kaitlin E. Samocha,Mark J. Daly,Mark J. Daly,Daniel G. MacArthur,Daniel G. MacArthur,Menachem Fromer,Shaun Purcell +13 more
TL;DR: This work characterized the rates and properties of rare genic CNVs in exome sequencing data from nearly 60,000 individuals in the Exome Aggregation Consortium (ExAC) database, and empirically estimated an index of relative intolerance to CNVs that demonstrated moderate correlation with measures of genic constraint based on single-nucleotide variation (SNV) and was independently correlated with Measures of evolutionary conservation.