H
Henning Hermjakob
Researcher at European Bioinformatics Institute
Publications - 334
Citations - 72741
Henning Hermjakob is an academic researcher from European Bioinformatics Institute. The author has contributed to research in topics: Proteomics Standards Initiative & UniProt. The author has an hindex of 80, co-authored 323 publications receiving 64702 citations. Previous affiliations of Henning Hermjakob include St. John's University & Birkbeck, University of London.
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Journal ArticleDOI
On the frequency of protein glycosylation, as deduced from analysis of the SWISS-PROT database.
TL;DR: It is concluded that the majority of sequon containing proteins will be found to be glycosylated and that more than half of all proteins are glycoproteins.
Journal ArticleDOI
The MIntAct project--IntAct as a common curation platform for 11 molecular interaction databases.
Sandra Orchard,Mais G. Ammari,Bruno Aranda,Lionel Breuza,Leonardo Briganti,Fiona Broackes-Carter,Nancy H. Campbell,Gayatri Chavali,Carol Chen,Noemi del-Toro,Margaret Duesbury,Marine Dumousseau,Eugenia Galeota,Ursula Hinz,Marta Iannuccelli,Sruthi Jagannathan,Rafael C. Jimenez,Jyoti Khadake,Astrid Lagreid,Luana Licata,Ruth C. Lovering,Birgit H M Meldal,Anna N. Melidoni,Mila Milagros,Daniele Peluso,Livia Perfetto,Pablo Porras,Arathi Raghunath,Sylvie Ricard-Blum,Bernd Roechert,Andre Stutz,Michael Tognolli,Kim Van Roey,Gianni Cesareni,Henning Hermjakob +34 more
TL;DR: All data manually curated by the MINT curators have been moved into the IntAct database at EMBL-EBI and are merged with the existing IntAct dataset.
Journal ArticleDOI
Databases on transcriptional regulation: TRANSFAC, TRRD and COMPEL
T. Heinemeyer,Edgar Wingender,Ingmar Reuter,Henning Hermjakob,Alexander E. Kel,O. V. Kel,Elena V. Ignatieva,E. A. Ananko,O. A. Podkolodnaya,Fedor A. Kolpakov,N. L. Podkolodny,Nikolay A. Kolchanov +11 more
TL;DR: The quantitative and qualitative changes of all three databases and connected programs are described.
Journal ArticleDOI
Reactome: a database of reactions, pathways and biological processes
David Croft,Gavin O'Kelly,Guanming Wu,Robin Haw,Marc Gillespie,Lisa Matthews,Michael Caudy,Phani V. Garapati,Gopal R. Gopinath,Bijay Jassal,S Jupe,Irina Kalatskaya,Shahana S. Mahajan,Shahana S. Mahajan,Bruce May,Nelson Ndegwa,Esther Schmidt,Veronica Shamovsky,Christina K. Yung,Ewan Birney,Henning Hermjakob,Peter D'Eustachio,Lincoln Stein,Lincoln Stein,Lincoln Stein +24 more
TL;DR: A new web site with improved tools for pathway browsing and data analysis is developed, and orthology-based inferences of pathways in non-human species are made, applying Ensembl Compara to identify orthologs of curated human proteins in each of 20 other species.
Journal ArticleDOI
The IntAct molecular interaction database in 2012
Samuel Kerrien,Bruno Aranda,Lionel Breuza,Alan Bridge,Fiona Broackes-Carter,Carol Chen,Margaret Duesbury,Marine Dumousseau,M Feuermann,Ursula Hinz,Christine Jandrasits,Rafael C. Jimenez,Jyoti Khadake,Usha Mahadevan,Patrick Masson,Ivo Pedruzzi,Eric Pfeiffenberger,Pablo Porras,Arathi Raghunath,Bernd Roechert,Sandra Orchard,Henning Hermjakob +21 more
TL;DR: Two levels of curation are now available within the IntAct database, with both IMEx-level annotation and less detailed MIMIx-compatible entries currently supported.