H
Henning Hermjakob
Researcher at European Bioinformatics Institute
Publications - 334
Citations - 72741
Henning Hermjakob is an academic researcher from European Bioinformatics Institute. The author has contributed to research in topics: Proteomics Standards Initiative & UniProt. The author has an hindex of 80, co-authored 323 publications receiving 64702 citations. Previous affiliations of Henning Hermjakob include St. John's University & Birkbeck, University of London.
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Journal ArticleDOI
jmzTab: A Java interface to the mzTab data standard
Qing-Wei Xu,Qing-Wei Xu,Johannes Griss,Johannes Griss,Rui Wang,Andrew R. Jones,Henning Hermjakob,Juan Antonio Vizcaíno +7 more
TL;DR: An open‐source Java application programming interface for mzTab called jmzTab is presented, which allows the efficient processing of mz Tab files, providing read and write capabilities, and is designed to be embedded in other software packages.
Journal ArticleDOI
The EBI enzyme portal
Rafael Alcántara,Joseph Onwubiko,Hong Cao,Paula de Matos,Jennifer A. Cham,Julius O.B. Jacobsen,Gemma L. Holliday,Julia D. Fischer,Syed Asad Rahman,Bijay Jassal,Mickael Goujon,Francis Rowland,Sameer Velankar,Rodrigo Lopez,John P. Overington,Gerard J. Kleywegt,Henning Hermjakob,Claire O'Donovan,Maria Jesus Martin,Janet M. Thornton,Christoph Steinbeck +20 more
TL;DR: An enzyme portal is developed to provide this wealth of information on enzymes from multiple in-house resources addressing particular data classes: protein sequence and structure, reactions, pathways and small molecules.
Journal ArticleDOI
Shared resources, shared costs--leveraging biocuration resources.
Sandra Orchard,Henning Hermjakob +1 more
TL;DR: The value of this approach in comparison with other apparently less costly options, such as automated annotation or text-mining, is argued, and ways in which databases can make cost savings by sharing infrastructure and tool development are discussed.
Journal ArticleDOI
The Minimum Information about a Molecular Interaction CAusal STatement (MI2CAST).
Vasundra Touré,Steven Vercruysse,Marcio Luis Acencio,Ruth C. Lovering,Sandra Orchard,Glyn Bradley,Cristina Casals-Casas,Claudine Chaouiya,Noemi del-Toro,Åsmund Flobak,Pascale Gaudet,Henning Hermjakob,Charles Tapley Hoyt,Luana Licata,Astrid Lægreid,Christopher J. Mungall,Anne Niknejad,Simona Panni,Livia Perfetto,Pablo Porras,Dexter Pratt,Julio Saez-Rodriguez,Julio Saez-Rodriguez,Denis Thieffry,Paul Thomas,Dénes Türei,Martin Kuiper +26 more
TL;DR: A checklist that accommodates current representations of causal relationships between biological components, called the Minimum Information about a Molecular Interaction CAusal STatement (MI2CAST), which can be used as reporting guidelines when annotating and curating causal statements, while fostering uniformity and interoperability of the data across resources.
Journal ArticleDOI
Ten years of standardizing proteomic data: a report on the HUPO-PSI Spring Workshop: April 12-14th, 2012, San Diego, USA.
Sandra Orchard,Pierre-Alain Binz,Christoph H. Borchers,Michael K. Gilson,Andrew R. Jones,George Nicola,Juan Antonio Vizcaíno,Eric W. Deutsch,Henning Hermjakob +8 more
TL;DR: The Human Proteome Organisation Proteomics Standards Initiative (HUPO-PSI) was established in 2002 with the aim of defining community standards for data representation in proteomics and facilitating data comparison, exchange and verification.