H
Henning Hermjakob
Researcher at European Bioinformatics Institute
Publications - 334
Citations - 72741
Henning Hermjakob is an academic researcher from European Bioinformatics Institute. The author has contributed to research in topics: Proteomics Standards Initiative & UniProt. The author has an hindex of 80, co-authored 323 publications receiving 64702 citations. Previous affiliations of Henning Hermjakob include St. John's University & Birkbeck, University of London.
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Journal ArticleDOI
The PSI formal document process and its implementation on the PSI website.
TL;DR: The web interface used to support HUPO‐PSI document processes for reviewing MIAPE documents, specifications, community practice and informational documents is presented.
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VARSPLIC: alternatively-spliced protein sequences derived from SWISS-PROT and TrEMBL.
TL;DR: The program varsplic.pl uses information present in the SWISS-PROT and TrEMBL databases to create new records for alternatively spliced isoforms that can be used in similarity searches.
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The HUPO proteomics standards initiative—easing communication and minimizing data loss in a changing world
Sandra Orchard,Henning Hermjakob +1 more
TL;DR: The Human Proteome Organisation Proteomics Standards Initiative (HUPO-PSI) was tasked with the creation of data standards and interchange formats to allow both the exchange and storage of such data irrespective of the hardware and software from which it was generated.
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InteroPORC: automated inference of highly conserved protein interaction networks
Magali Michaut,Samuel Kerrien,Luisa Montecchi-Palazzi,Franck Chauvat,Corinne Cassier-Chauvat,Jean-Christophe Aude,Pierre Legrain,Henning Hermjakob +7 more
TL;DR: An automated prediction tool developed for all sequenced genomes available in Integr8 is presented and a second method to predict protein-protein interactions in the widely used cyanobacterium Synechocystis is developed.
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qcML: An Exchange Format for Quality Control Metrics from Mass Spectrometry Experiments
Mathias Walzer,Lucia Espona Pernas,Sara Nasso,Sara Nasso,Wout Bittremieux,Sven Nahnsen,Pieter Kelchtermans,Pieter Kelchtermans,Peter Pichler,Peter Pichler,Henk W. P. van den Toorn,An Staes,Jonathan Vandenbussche,Michael Mazanek,Michael Mazanek,Thomas Taus,Thomas Taus,Richard A. Scheltema,Christian D. Kelstrup,Laurent Gatto,Bas van Breukelen,Stephan Aiche,Dirk Valkenborg,Dirk Valkenborg,Dirk Valkenborg,Kris Laukens,Kathryn S. Lilley,Jesper V. Olsen,Albert J. R. Heck,Karl Mechtler,Karl Mechtler,Ruedi Aebersold,Ruedi Aebersold,Kris Gevaert,Juan Antonio Vizcaíno,Henning Hermjakob,Oliver Kohlbacher,Lennart Martens +37 more
TL;DR: The qcML format is described, an XML-based standard that follows the design principles of the related mzML, mzIdentML,mzQuantML, and TraML standards from the HUPO-PSI (Proteomics Standards Initiative), so that existing LIMS systems can easily add relational storage of the quality control data to their existing schema.