M
Margrethe H. Serres
Researcher at Marine Biological Laboratory
Publications - 21
Citations - 2529
Margrethe H. Serres is an academic researcher from Marine Biological Laboratory. The author has contributed to research in topics: Shewanella oneidensis & Genome. The author has an hindex of 15, co-authored 21 publications receiving 2359 citations.
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Journal ArticleDOI
Towards environmental systems biology of Shewanella
James K. Fredrickson,Margaret F. Romine,Alexander S. Beliaev,Jennifer M. Auchtung,Michael E. Driscoll,Timothy S. Gardner,Kenneth H. Nealson,Andrei L. Osterman,Grigoriy E. Pinchuk,Jennifer L. Reed,Dmitry A. Rodionov,Jorge L. M. Rodrigues,Daad A. Saffarini,Margrethe H. Serres,Alfred M. Spormann,Igor B. Zhulin,James M. Tiedje +16 more
TL;DR: Systems-level analysis of the model species Shewanella oneidensis MR-1 and other members of this genus has provided new insights into the signal-transduction proteins, regulators, and metabolic and respiratory subsystems that govern the remarkable versatility of the shewanellae.
Journal ArticleDOI
Escherichia coli K-12: a cooperatively developed annotation snapshot—2005
Monica Riley,Takashi Abe,Martha B. Arnaud,Mary B. Berlyn,Frederick R. Blattner,Roy R. Chaudhuri,Jeremy D. Glasner,Takashi Horiuchi,Ingrid M. Keseler,Takehide Kosuge,Hirotada Mori,Hirotada Mori,Nicole T. Perna,Guy Plunkett,Kenneth E. Rudd,Margrethe H. Serres,Gavin H. Thomas,Nicholas R. Thomson,David S. Wishart,Barry L. Wanner +19 more
TL;DR: A snapshot analysis based on the most recent genome sequences of two E.coli K-12 strains allows comparison of their genotypes and mutant status of alleles.
Journal ArticleDOI
MultiFun, a multifunctional classification scheme for Escherichia coli K-12 gene products.
Margrethe H. Serres,Monica Riley +1 more
TL;DR: An enriched classification system for cellular functions of gene products of Escherichia coli K-12 was developed based on the initial classification by Riley and believes this classification system will be useful in the field of genome analysis, both for annotation purposes and for comparative studies.
Journal ArticleDOI
A functional update of the Escherichia coli K-12 genome
TL;DR: An updated version of the annotated E. coli K-12 chromosome has been generated on the basis of manual evaluation of functions predicted by BLAST and DARWIN analyses and by the MAGPIE genome annotation system.
Journal ArticleDOI
Global profiling of Shewanella oneidensis MR-1: Expression of hypothetical genes and improved functional annotations
Eugene Kolker,Alex F. Picone,Michael Y. Galperin,Margaret F. Romine,Roger Higdon,Kira S. Makarova,Natali Kolker,Gordon A. Anderson,Xiaoyun Qiu,Kenneth J. Auberry,Gyorgy Babnigg,Alexander S. Beliaev,Paul T. Edlefsen,Dwayne A. Elias,Yuri A. Gorby,Ted Holzman,Joel A. Klappenbach,Konstantinos T. Konstantinidis,Miriam Land,Mary S. Lipton,Lee Ann McCue,Matthew E. Monroe,Ljiljana Paša-Tolić,Grigoriy E. Pinchuk,Samuel O. Purvine,Margrethe H. Serres,Sasha Tsapin,Brian A. Zakrajsek,Wenhong Zhu,Jishong Zhou,Frank W. Larimer,Charles E. Lawrence,Monica Riley,Frank R. Collart,John R. Yates,Richard D. Smith,Carol S. Giometti,Kenneth H. Nealson,James K. Fredrickson,James M. Tiedje +39 more
TL;DR: An integrative approach is proposed that offers a valuable means to undertake the enormous challenge of characterizing the rapidly growing number of hypothetical proteins with each newly sequenced genome.