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James B. Dunbar

Researcher at University of Michigan

Publications -  40
Citations -  1932

James B. Dunbar is an academic researcher from University of Michigan. The author has contributed to research in topics: Binding site & Hydrogen bond. The author has an hindex of 24, co-authored 40 publications receiving 1747 citations. Previous affiliations of James B. Dunbar include Parke-Davis & Pfizer.

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D3R Grand Challenge 2015: Evaluation of Protein-Ligand Pose and Affinity Predictions

TL;DR: The Drug Design Data Resource (D3R) ran Grand Challenge 2015 between September 2015 and February 2016, and this overview describes the datasets and the organization of the challenge components, summarizes the results across all submitted predictions, and considers broad conclusions that may be drawn from this collaborative community endeavor.
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CSAR Benchmark Exercise of 2010: Combined Evaluation Across All Submitted Scoring Functions

TL;DR: Poorly scored complexes were found to have ligands that were the same size as those in well-scored complexes, but hydrogen bonding and torsional strain were significantly different, pointing to a need for CSAR to develop data sets of congeneric series with a range of hydrogen-bonding and hydrophobic characteristics and arange of rotatable bonds.
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CSAR Benchmark Exercise 2011–2012: Evaluation of Results from Docking and Relative Ranking of Blinded Congeneric Series

TL;DR: Pose prediction proved to be the most straightforward task, and most methods were able to successfully reproduce binding poses when the crystal structure employed was co-crystallized with a ligand from the same chemical series.
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CSAR Benchmark Exercise of 2010: Selection of the Protein–Ligand Complexes

TL;DR: The details of how the data set was initially selected, and the process by which it matured to better fit the needs of the community are presented, underscores the value of a supportive, collaborative effort in moving the field forward.