J
James B. Dunbar
Researcher at University of Michigan
Publications - 40
Citations - 1932
James B. Dunbar is an academic researcher from University of Michigan. The author has contributed to research in topics: Binding site & Hydrogen bond. The author has an hindex of 24, co-authored 40 publications receiving 1747 citations. Previous affiliations of James B. Dunbar include Parke-Davis & Pfizer.
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D3R Grand Challenge 2015: Evaluation of Protein-Ligand Pose and Affinity Predictions
Symon Gathiaka,Shuai Liu,Michael Chiu,Huanwang Yang,Jeanne A. Stuckey,You Na Kang,Jim Delproposto,Ginger Kubish,James B. Dunbar,Heather A. Carlson,Stephen K. Burley,Stephen K. Burley,W. Patrick Walters,Rommie E. Amaro,Victoria A. Feher,Victoria A. Feher,Michael K. Gilson +16 more
TL;DR: The Drug Design Data Resource (D3R) ran Grand Challenge 2015 between September 2015 and February 2016, and this overview describes the datasets and the organization of the challenge components, summarizes the results across all submitted predictions, and considers broad conclusions that may be drawn from this collaborative community endeavor.
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CSAR Benchmark Exercise of 2010: Combined Evaluation Across All Submitted Scoring Functions
Richard D. Smith,James B. Dunbar,Peter Man-Un Ung,Emilio Xavier Esposito,Chao Yie Yang,Shaomeng Wang,Heather A. Carlson +6 more
TL;DR: Poorly scored complexes were found to have ligands that were the same size as those in well-scored complexes, but hydrogen bonding and torsional strain were significantly different, pointing to a need for CSAR to develop data sets of congeneric series with a range of hydrogen-bonding and hydrophobic characteristics and arange of rotatable bonds.
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Novel Series of Achiral, Low Molecular Weight, and Potent HIV-1 Protease Inhibitors
J. V. N. Vara Prasad,Kimberly Suzanne Para,Elizabeth A. Lunney,Daniel F. Ortwine,James B. Dunbar,Donna Ferguson,Peter J. Tummino,Donald Hupe,Bradley Dean Tait +8 more
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CSAR Benchmark Exercise 2011–2012: Evaluation of Results from Docking and Relative Ranking of Blinded Congeneric Series
TL;DR: Pose prediction proved to be the most straightforward task, and most methods were able to successfully reproduce binding poses when the crystal structure employed was co-crystallized with a ligand from the same chemical series.
Journal ArticleDOI
CSAR Benchmark Exercise of 2010: Selection of the Protein–Ligand Complexes
James B. Dunbar,Richard D. Smith,Chao Yie Yang,Peter Man-Un Ung,Katrina W. Lexa,Nickolay A. Khazanov,Jeanne A. Stuckey,Shaomeng Wang,Heather A. Carlson +8 more
TL;DR: The details of how the data set was initially selected, and the process by which it matured to better fit the needs of the community are presented, underscores the value of a supportive, collaborative effort in moving the field forward.