J
James E. Barrett
Researcher at King's College London
Publications - 39
Citations - 580
James E. Barrett is an academic researcher from King's College London. The author has contributed to research in topics: Medicine & Cancer. The author has an hindex of 8, co-authored 25 publications receiving 352 citations. Previous affiliations of James E. Barrett include University of Innsbruck & University College London.
Papers
More filters
Journal ArticleDOI
Molecular dissection of colorectal cancer in pre-clinical models identifies biomarkers predicting sensitivity to EGFR inhibitors
Moritz Schütte,Thomas Risch,Nilofar Abdavi-Azar,Karsten Boehnke,Dirk Schumacher,Dirk Schumacher,Marlen Keil,Reha Yildiriman,Christine Jandrasits,Tatiana Borodina,Vyacheslav Amstislavskiy,Catherine L. Worth,Caroline Schweiger,Sandra Liebs,Martin Lange,Hans-Jörg Warnatz,Lee M. Butcher,Lee M. Butcher,James E. Barrett,Marc Sultan,Christoph Wierling,Nicole Golob-Schwarzl,Sigurd Lax,Stefan Uranitsch,Michael Becker,Yvonne Welte,Joseph L. Regan,Maxine Silvestrov,Inge Kehler,Alberto Fusi,Thomas Kessler,Ralf Herwig,Ulf Landegren,Dirk Wienke,Mats Nilsson,Mats Nilsson,Juan A. Velasco,Pilar Garin-Chesa,Christoph Reinhard,Stephan Beck,Reinhold Schäfer,Reinhold Schäfer,Christian R. A. Regenbrecht,David Henderson,Bodo Lange,Johannes Haybaeck,Ulrich Keilholz,Jens Hoffmann,Hans Lehrach,Marie-Laure Yaspo +49 more
TL;DR: Linking molecular profiles with drug sensitivity patterns identifies novel biomarkers, including a signature outperforming RAS/RAF mutations in predicting sensitivity to the EGFR inhibitor cetuximab.
Journal ArticleDOI
eFORGE: A Tool for Identifying Cell Type-Specific Signal in Epigenomic Data
Charles E. Breeze,Dirk S. Paul,Jenny van Dongen,Lee M. Butcher,Lee M. Butcher,John Ambrose,James E. Barrett,Robert Lowe,Vardhman K. Rakyan,Valentina Iotchkova,Valentina Iotchkova,Mattia Frontini,Mattia Frontini,Kate Downes,Kate Downes,Willem H. Ouwehand,Jonathan Laperle,Pierre-Étienne Jacques,Pierre-Étienne Jacques,Guillaume Bourque,Anke K. Bergmann,Reiner Siebert,Reiner Siebert,Edo Vellenga,Sadia Saeed,Sadia Saeed,Filomena Matarese,Joost H.A. Martens,Hendrik G. Stunnenberg,Andrew E. Teschendorff,Javier Herrero,Ewan Birney,Ian Dunham,Stephan Beck +33 more
TL;DR: Application of eFORGE to 20 publicly available EWAS datasets identified disease-relevant cell types for several common diseases, a stem cell-like signature in cancer, and demonstrated the ability to detect cell-composition effects for EWAS performed on heterogeneous tissues.
Journal ArticleDOI
Proteomic analysis of plasma from children with sickle cell anemia and silent cerebral infarction.
Sanjay Tewari,George Renney,John N. Brewin,Kate Gardner,Fenella J. Kirkham,Baba Inusa,James E. Barrett,Stephan Menzel,Swee Lay Thein,Malcolm Ward,David C. Rees +10 more
TL;DR: It is suggested that silent cerebral infarcts in sickle cell anemia may be associated with higher systolic blood pressure, lower HbF levels, hypercoagulability, inflammation and atherosclerotic lipoproteins.
Journal ArticleDOI
The WID-BC-index identifies women with primary poor prognostic breast cancer based on DNA methylation in cervical samples
James E. Barrett,Chiara Maria Stella Herzog,Allison Jones,Olivia C. Leavy,Iona Evans,Susanne Knapp,Daniel Reisel,Tatiana Nazarenko,Yoo Na Kim,Dorella Franchi,Andrew M. Ryan,Joanna Franks,Line Bjørge,Michal Zikan,David Cibula,Nadia Harbeck,Nicoletta Colombo,Frank Dudbridge,Louise Jones,Karin Sundström,Joakim Dillner,Angelique Flöter Rådestad,Kristina Gemzell-Danielsson,Nora Pashayan,Martin Widschwendter +24 more
TL;DR: Wang et al. as discussed by the authors developed the DNA methylation-based women's risk IDentification for Breast Cancer index (WID-BC-index) that identifies women with breast cancer with an AUROC (Area Under the Receiver Operator Characteristic) of 0.84 (95% CI: 0.80-0.88) and 0.81 (95 % CI:0.76 −0.86) in internal and external validation sets, respectively.
Posted Content
Gaussian process regression for survival data with competing risks
TL;DR: This proposed model belongs to the class of accelerated failure time models where it focuses on directly characterising the relationship between covariates and event times without any explicit assumptions on what form the hazard rates take.