J
Jennifer Cho
Researcher at J. Craig Venter Institute
Publications - 9
Citations - 2085
Jennifer Cho is an academic researcher from J. Craig Venter Institute. The author has contributed to research in topics: Expressed sequence tag & GenBank. The author has an hindex of 9, co-authored 9 publications receiving 2057 citations. Previous affiliations of Jennifer Cho include TigerLogic.
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Journal ArticleDOI
Genome sequence and comparative analysis of the model rodent malaria parasite Plasmodium yoelii yoelii
Jane M. Carlton,Samuel V. Angiuoli,Bernard B. Suh,Taco W. A. Kooij,Mihaela Pertea,Joana C. Silva,Maria D. Ermolaeva,Jonathan E. Allen,Jeremy D. Selengut,Hean L. Koo,Jeremy Peterson,Mihai Pop,Daniel S. Kosack,Martin Shumway,Shelby L. Bidwell,Shamira J. Shallom,Susan Van Aken,Steven B. Riedmuller,Tamara Feldblyum,Jennifer Cho,John Quackenbush,Martha Sedegah,Azadeh Shoaibi,Leda M. Cummings,Laurence Florens,John R. Yates,J. Dale Raine,Robert E. Sinden,Michael Harris,Deirdre A. Cunningham,Peter R. Preiser,Lawrence W. Bergman,Akhil B. Vaidya,Leo H.M. van Lin,Chris J. Janse,Andrew P. Waters,Hamilton O. Smith,Owen White,Steven L. Salzberg,J. Craig Venter,Claire M. Fraser,Stephen L. Hoffman,Malcolm J. Gardner,Daniel J. Carucci +43 more
TL;DR: This is the first genome sequence of a model eukaryotic parasite, and it provides insight into the use of such systems in the modelling of Plasmodium biology and disease.
Journal ArticleDOI
The TIGR Gene Indices: analysis of gene transcript sequences in highly sampled eukaryotic species
John Quackenbush,Jennifer Cho,Dan Lee,Feng Liang,Ingeborg Holt,Svetlana Karamycheva,Babak Parvizi,Geo Pertea,Razvan Sultana,Joseph White +9 more
TL;DR: The TIGR Gene Indices are a collection of species-specific databases that use a highly refined protocol to analyze EST sequences in an attempt to identify the genes represented by that data and to provide additional information regarding those genes.
Journal ArticleDOI
Comparative Analyses of Potato Expressed Sequence Tag Libraries
Catherine M. Ronning,Svetlana S. Stegalkina,Robert A. Ascenzi,Oleg Bougri,Amy L. Hart,Teresa R. Utterbach,Susan E. Vanaken,Steven B. Riedmuller,Joseph A. White,Jennifer Cho,Geo Pertea,Yuandan Lee,Svetlana Karamycheva,Razvan Sultana,Jennifer Tsai,John Quackenbush,H. M. Griffiths,Silvia Restrepo,Christine D. Smart,William E. Fry,Rutger Van der Hoeven,Steve Tanksley,Peifen Zhang,Hailing Jin,Miki L. Yamamoto,Barbara Baker,C. Robin Buell +26 more
TL;DR: Using hierarchal and k means clustering of the EST sequences, changes in gene expression with major physiological events in potato biology are correlated and genes with tuber initiation, dormancy, and sprouting are associated.
Journal ArticleDOI
Cross-Referencing Eukaryotic Genomes: TIGR Orthologous Gene Alignments (TOGA)
Yuandan Lee,Razvan Sultana,Geo Pertea,Jennifer Cho,Svetlana Karamycheva,Jennifer Tsai,Babak Parvizi,Foo Cheung,Valentin Antonescu,Joseph White,Ingeborg Holt,Feng Liang,John Quackenbush +12 more
TL;DR: The TIGR Orthologous Gene Alignment database is developed to provide a cross-reference between fully and partially sequenced eukaryotic transcribed sequences to identify putative orthologs and paralogs for known genes, as well as those that exist only as uncharacterized ESTs.
Journal ArticleDOI
Exploring the transcriptome of the malaria sporozoite stage
Stefan H. I. Kappe,Malcolm J. Gardner,Stuart M. Brown,Jessica Ross,Kai Matuschewski,José M. C. Ribeiro,John H. Adams,John Quackenbush,Jennifer Cho,Daniel J. Carucci,Stephen L. Hoffman,Victor Nussenzweig +11 more
TL;DR: A high quality cDNA library of the Plasmodium sporozoite stage is constructed by using the rodent malaria parasite P. yoelii, an important model for malaria vaccine development and ESTs for three proteins that may be involved in host cell invasion are identified and documented their expression in sporozoites.