J
Jennifer Modamio
Researcher at University of Luxembourg
Publications - 13
Citations - 1239
Jennifer Modamio is an academic researcher from University of Luxembourg. The author has contributed to research in topics: Metabolic network & Deep learning. The author has an hindex of 5, co-authored 10 publications receiving 718 citations.
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Journal ArticleDOI
Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v.3.0
Laurent Heirendt,Sylvain Arreckx,Thomas Pfau,Sebastián N. Mendoza,Anne Richelle,Almut Heinken,Hulda S. Haraldsdóttir,Jacek Wachowiak,Sarah M. Keating,Vanja Vlasov,Stefania Magnusdottir,Chiam Yu Ng,German Preciat,Alise Žagare,Siu Hung Joshua Chan,Maike K. Aurich,Catherine M. Clancy,Jennifer Modamio,John T. Sauls,Alberto Noronha,Aarash Bordbar,Benjamin Cousins,Diana C. El Assal,Luis Vitores Valcárcel,Iñigo Apaolaza,Susan Ghaderi,Masoud Ahookhosh,Marouen Ben Guebila,Andrejs Kostromins,Nicolas Sompairac,Hoai M. Le,Ding Ma,Yuekai Sun,Lin Wang,James T. Yurkovich,Miguel A.P. Oliveira,Phan Tu Vuong,Lemmer P. El Assal,Inna Kuperstein,Andrei Zinovyev,H. Scott Hinton,William A. Bryant,Francisco J. Aragón Artacho,Francisco J. Planes,Egils Stalidzans,Alejandro Maass,Santosh Vempala,Michael Hucka,Michael A. Saunders,Costas D. Maranas,Nathan E. Lewis,Thomas Sauter,Bernhard O. Palsson,Bernhard O. Palsson,Ines Thiele,Ronan M. T. Fleming,Ronan M. T. Fleming +56 more
TL;DR: This protocol provides an overview of all new features of the COBRA Toolbox and can be adapted to generate and analyze constraint-based models in a wide variety of scenarios.
Journal ArticleDOI
The Virtual Metabolic Human database: integrating human and gut microbiome metabolism with nutrition and disease.
Alberto Noronha,Jennifer Modamio,Yohan Jarosz,Elisabeth Guerard,Nicolas Sompairac,German Andres Preciat Gonzalez,Anna Dröfn Daníelsdóttir,Max Krecke,Diane Merten,Hulda S. Haraldsdóttir,Almut Heinken,Laurent Heirendt,Stefania Magnusdottir,Dmitry A. Ravcheev,Swagatika Sahoo,Piotr Gawron,Lucia Friscioni,Beatriz Garcia,Mabel Prendergast,Alberto Puente,Mariana Rodrigues,Akansha Roy,Mouss Rouquaya,Luca Wiltgen,Alise Žagare,Elisabeth John,Maren Krueger,Inna Kuperstein,Andrei Zinovyev,Reinhard Schneider,Ronan M. T. Fleming,Ronan M. T. Fleming,Ines Thiele +32 more
TL;DR: The VMH represents a novel, interdisciplinary database for data interpretation and hypothesis generation to the biomedical community and encapsulating current knowledge of human metabolism within five interlinked resources.
Posted Content
Creation and analysis of biochemical constraint-based models: the COBRA Toolbox v3.0.
Laurent Heirendt,Sylvain Arreckx,Thomas Pfau,Sebastián N. Mendoza,Anne Richelle,Almut Heinken,Hulda S. Haraldsdóttir,Jacek Wachowiak,Sarah M. Keating,Vanja Vlasov,Stefania Magnusdottir,Chiam Yu Ng,German Preciat,Alise Žagare,Siu Hung Joshua Chan,Maike K. Aurich,Catherine M. Clancy,Jennifer Modamio,John T. Sauls,Alberto Noronha,Aarash Bordbar,Benjamin Cousins,Diana C. El Assal,Luis Vitores Valcárcel,Iñigo Apaolaza,Susan Ghaderi,Masoud Ahookhosh,Marouen Ben Guebila,Andrejs Kostromins,Nicolas Sompairac,Hoai M. Le,Ding Ma,Yuekai Sun,Lin Wang,James T. Yurkovich,Miguel A.P. Oliveira,Phan Tu Vuong,Lemmer P. El Assal,Inna Kuperstein,Andrei Zinovyev,H. Scott Hinton,William A. Bryant,Francisco J. Aragón Artacho,Francisco J. Planes,Egils Stalidzans,Alejandro Maass,Santosh Vempala,Michael Hucka,Michael A. Saunders,Costas D. Maranas,Nathan E. Lewis,Thomas Sauter,Bernhard O. Palsson,Ines Thiele,Ronan M. T. Fleming +54 more
TL;DR: This protocol can be adapted for the generation and analysis of a constraint-based model in a wide variety of molecular systems biology scenarios and is an update to the COBRA Toolbox 1.0 and 2.0.
Posted ContentDOI
The Virtual Metabolic Human database: integrating human and gut microbiome metabolism with nutrition and disease
Alberto Noronha,Jennifer Modamio,Yohan Jarosz,Nicolas Sompairac,German Andres Preciat Gonzalez,Anna Dröfn Daníelsdóttir,Max Krecke,Diane Merten,Hulda S. Haraldsdóttir,Almut Heinken,Laurent Heirendt,Stefania Magnusdottir,Dmitry A. Ravcheev,Swagatika Sahoo,Piotr Gawron,Elisabeth Guerard,Lucia Friscioni,Beatriz Garcia,Mabel Prendergast,Alberto Puente,Mariana Rodrigues,Akansha Roy,Mouss Rouquaya,Luca Wiltgen,Alise Zagare,Elisabeth John,Maren Krueger,Inna Kuperstein,Andrei Zinovyev,Reinhard Schneider,Ronan M. T. Fleming,Ines Thiele +31 more
TL;DR: The VMH represents a novel, interdisciplinary database for data interpretation and hypothesis generation to the biomedical community and is described with four examples the VMH’s utility.
Journal ArticleDOI
Reproducible generation of human midbrain organoids for in vitro modeling of Parkinson's disease
Sarah Louise Nickels,Jennifer Modamio,Bárbara Mendes-Pinheiro,Anna S. Monzel,Fay Betsou,Jens Christian Schwamborn +5 more
TL;DR: An optimized approach for the standardized generation of midbrain organoids is described that addresses limitations, while maintaining key features of mid brain development like dopaminergic neuron and astrocyte differentiation.