J
Joanne Soo
Researcher at Stanford University
Publications - 27
Citations - 685
Joanne Soo is an academic researcher from Stanford University. The author has contributed to research in topics: Diffuse large B-cell lymphoma & Medicine. The author has an hindex of 6, co-authored 22 publications receiving 305 citations. Previous affiliations of Joanne Soo include Duke University.
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Journal ArticleDOI
Circulating Tumor DNA Measurements As Early Outcome Predictors in Diffuse Large B-Cell Lymphoma
David M. Kurtz,Florian Scherer,Florian Scherer,Michael C. Jin,Joanne Soo,Alexander F.M. Craig,Mohammad Shahrokh Esfahani,Jacob J. Chabon,Henning Stehr,Chih Long Liu,Robert Tibshirani,Lauren S. Maeda,Neel K. Gupta,Michael S. Khodadoust,Ranjana H. Advani,Ronald Levy,Aaron M. Newman,Ulrich Dührsen,Andreas Hüttmann,Michel Meignan,Rene-Olivier Casasnovas,Jason R. Westin,Mark Roschewski,Wyndham H. Wilson,Gianluca Gaidano,Davide Rossi,Davide Rossi,Maximilian Diehn,Ash A. Alizadeh +28 more
TL;DR: Pretreatment ctDNA levels and molecular responses are independently prognostic of outcomes in aggressive lymphomas, and these risk factors could potentially guide future personalized risk-directed approaches.
Journal ArticleDOI
Dynamic Risk Profiling Using Serial Tumor Biomarkers for Personalized Outcome Prediction.
David M. Kurtz,Mohammad Shahrokh Esfahani,Florian Scherer,Joanne Soo,Michael C. Jin,Chih Long Liu,Aaron M. Newman,Ulrich Dührsen,Andreas Hüttmann,Olivier Casasnovas,Jason R. Westin,Matthais Ritgen,Sebastian Böttcher,Anton W. Langerak,Mark Roschewski,Wyndham H. Wilson,Gianluca Gaidano,Davide Rossi,Jasmin Bahlo,Michael Hallek,Michael Hallek,Robert Tibshirani,Maximilian Diehn,Ash A. Alizadeh +23 more
TL;DR: The Continuous Individualized Risk Index is described, a method to dynamically determine outcome probabilities for individual patients utilizing risk predictors acquired over time that envision that dynamic risk assessment will facilitate personalized medicine and enable innovative therapeutic paradigms.
Journal ArticleDOI
Enhanced detection of minimal residual disease by targeted sequencing of phased variants in circulating tumor DNA.
David M. Kurtz,Joanne Soo,Lyron Co Ting Keh,Stefan Alig,Jacob J. Chabon,Brian Sworder,Andre Schultz,Michael C. Jin,Florian Scherer,Florian Scherer,Andrea Garofalo,Charles Macaulay,Emily G. Hamilton,Binbin Chen,Mari Olsen,Joseph G Schroers-Martin,Alexander F.M. Craig,Everett J. Moding,Mohammad Shahrokh Esfahani,Chih Long Liu,Ulrich Dührsen,Andreas Hüttmann,René-Olivier Casasnovas,Jason R. Westin,Mark Roschewski,Wyndham H. Wilson,Gianluca Gaidano,Davide Rossi,Maximilian Diehn,Ash A. Alizadeh +29 more
TL;DR: In this paper, a method called PhasED-seq (Phased Variational Enrichment and Detection SeqSeq) was proposed, which uses multiple somatic mutations in individual DNA fragments to improve the sensitivity of ctDNA detection.
Journal ArticleDOI
Inferring gene expression from cell-free DNA fragmentation profiles
Mohammad Shahrokh Esfahani,Emily G. Hamilton,Mahya Mehrmohamadi,Barzin Y. Nabet,Stefan Alig,Daniel A King,Chloé B. Steen,Charles Macaulay,Andre Schultz,Monica Nesselbush,Joanne Soo,Joseph G Schroers-Martin,Binbin Chen,Michael S. Binkley,Henning Stehr,Jacob J. Chabon,Brian Sworder,Angela B. Hui,Matthew J. Frank,Everett J. Moding,Chih Long Liu,Aaron M. Newman,James M. Isbell,Charles M. Rudin,Bo Li,David M. Kurtz,Maximilian Diehn,Ash A. Alizadeh +27 more
TL;DR: In this paper , a method called EPIC-seq was proposed to infer gene expression profiles from cell-free DNA (cfDNA) using targeted sequencing of promoters of genes of interest.
Journal ArticleDOI
Inferring gene expression from cell-free DNA fragmentation profiles
Mohammad Shahrokh Esfahani,Emily G. Hamilton,Mahya Mehrmohamadi,Barzin Y. Nabet,Stefan Alig,Daniel A King,Chloé B. Steen,Charles Macaulay,Andre Schultz,Monica Nesselbush,Joanne Soo,Joseph G Schroers-Martin,Binbin Chen,Michael S. Binkley,Henning Stehr,Jacob J. Chabon,Brian Sworder,Angela B. Hui,Matthew J. Frank,Everett J. Moding,Chih Long Liu,Aaron M. Newman,James M. Isbell,Charles M. Rudin,Bo Li,David M. Kurtz,Maximilian Diehn,Ash A. Alizadeh +27 more
TL;DR: In this paper , the authors used epigenetic expression inference from cell-free DNA-sequencing (EPIC-seq) to detect lung carcinoma and diffuse large B cell lymphoma.