J
Johannes Söllner
Researcher at Intercell
Publications - 14
Citations - 995
Johannes Söllner is an academic researcher from Intercell. The author has contributed to research in topics: Gene & Interaction network. The author has an hindex of 10, co-authored 14 publications receiving 938 citations.
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Identification of in vivo expressed vaccine candidate antigens from Staphylococcus aureus.
Hildegard Etz,Duc Bui Minh,Tamás Henics,Agnieszka Dryla,Birgit Winkler,Christine Triska,Aoife Boyd,Johannes Söllner,Walter K. Schmidt,Uwe von Ahsen,Michael Buschle,Steven R. Gill,James F. Kolonay,Hanif Khalak,Claire M. Fraser,Alexander von Gabain,Eszter Nagy,Andreas Meinke +17 more
TL;DR: This work provides a comprehensive in vivo antigenic profile of Staphylococcus aureus, an important human pathogen, and makes use of whole genome sequence information, which has the potential to greatly accelerate and facilitate the formulation of novel vaccines.
Journal ArticleDOI
Towards a consensus on datasets and evaluation metrics for developing B-cell epitope prediction tools
Jason A. Greenbaum,Pernille Andersen,Martin J Blythe,Huynh-Hoa Bui,Raul E. Cachau,James E. Crowe,Matthew N. Davies,A. S. Kolaskar,Ole Lund,Sherrie L. Morrison,Brendan Mumey,Yanay Ofran,Jean-Luc Pellequer,Clemencia Pinilla,Julia Ponomarenko,Gajendra P. S. Raghava,Marc H V Van Regenmortel,Erwin Ludo Roggen,Alessandro Sette,Avner Schlessinger,Johannes Söllner,Martin S. Zand,Bjoern Peters +22 more
TL;DR: By developing common datasets, standardized data formats, and the means with which to consolidate information, it is hoped to greatly enhance the development of B‐cell epitope prediction tools.
Journal ArticleDOI
Machine learning approaches for prediction of linear B-cell epitopes on proteins.
Johannes Söllner,Bernd Mayer +1 more
TL;DR: Structural as well as physicochemical parameters have been utilized for predicting the antigenic propensity of protein sites and the performance of computational routines has been low when compared to experimental alternatives.
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Mouse Mammary Tumor Virus Integration Site Selection in Human and Mouse Genomes
Alexander Faschinger,Francoise Rouault,Johannes Söllner,Arno Lukas,Brian Salmons,Walter H. Günzburg,Stanislav Indik +6 more
TL;DR: MMTV displays the most random dispersion of integration sites among retroviruses determined so far, and not even a modest tendency in favor of integration within genes was observed.
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Functional selection of vaccine candidate peptides from Staphylococcus aureus whole-genome expression libraries in vitro.
Thomas Weichhart,Markus Horky,Johannes Söllner,Susanne Gangl,Tamás Henics,Eszter Nagy,Andreas Meinke,Alexander von Gabain,Claire M. Fraser,Steve R. Gill,Martin Hafner,Uwe von Ahsen +11 more
TL;DR: In vitro protein selection, not biased by the context of living entities, allows screening of genomic expression libraries with a large number of different ligands simultaneously, and is a powerful approach for fingerprinting the repertoire of immune reactive proteins serving as target candidates for active and passive vaccination against pathogens.