J
Joseph F. Ryan
Researcher at Whitney Laboratory for Marine Bioscience
Publications - 94
Citations - 4517
Joseph F. Ryan is an academic researcher from Whitney Laboratory for Marine Bioscience. The author has contributed to research in topics: Gene & Genome. The author has an hindex of 30, co-authored 82 publications receiving 3857 citations. Previous affiliations of Joseph F. Ryan include National Institutes of Health & University of Bergen.
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Journal ArticleDOI
The Genome of the Ctenophore Mnemiopsis leidyi and Its Implications for Cell Type Evolution
Joseph F. Ryan,Joseph F. Ryan,Kevin Pang,Christine E. Schnitzler,Anh Dao Nguyen,R. Travis Moreland,David Simmons,Bernard Koch,Warren R. Francis,Paul Havlak,Stephen A. Smith,Stephen A. Smith,Nicholas H. Putnam,Steven H. D. Haddock,Casey W. Dunn,Tyra G. Wolfsberg,James C. Mullikin,Mark Q. Martindale,Andreas D. Baxevanis +18 more
TL;DR: The genome of the ctenophore the warty comb jelly or sea walnut, Mnemiopsis leidyi, is sequenced and it is concluded that c tenophores alone, not sponges or the clade consisting of both ctenphores and cnidarians, are the most basal extant animals.
Journal ArticleDOI
Genomic evidence for ameiotic evolution in the bdelloid rotifer Adineta vaga
Jean-François Flot,Boris Hespeels,Xiang Li,Benjamin Noel,Irina R. Arkhipova,Etienne Danchin,Etienne Danchin,Etienne Danchin,Andreas Hejnol,Bernard Henrissat,Romain Koszul,Jean-Marc Aury,Valérie Barbe,Roxane Marie Barthélémy,Jens Bast,Georgii A. Bazykin,Georgii A. Bazykin,Olivier Chabrol,Arnaud Couloux,Martine Da Rocha,Martine Da Rocha,Martine Da Rocha,Corinne Da Silva,Eugene Gladyshev,Philippe Gouret,Oskar Hallatschek,Oskar Hallatschek,Bette Hecox-Lea,Bette Hecox-Lea,Karine Labadie,Benjamin Lejeune,Oliver Piskurek,Julie Poulain,Fernando Santos Rodríguez,Joseph F. Ryan,Olga A. Vakhrusheva,Olga A. Vakhrusheva,Eric Wajnberg,Eric Wajnberg,Eric Wajnberg,Bénédicte Wirth,Irina A. Yushenova,Manolis Kellis,Alexey S. Kondrashov,Alexey S. Kondrashov,David B. Mark Welch,Pierre Pontarotti,Jean Weissenbach,Jean Weissenbach,Patrick Wincker,Patrick Wincker,Olivier Jaillon,Karine Van Doninck +52 more
TL;DR: The genome of a bdelloid rotifer, Adineta vaga, is reported and it is shown that its structure is incompatible with conventional meiosis, and abundant evidence of gene conversion is found, which may limit the accumulation of deleterious mutations in the absence of meiosis.
Journal ArticleDOI
Pre-bilaterian origins of the Hox cluster and the Hox code: evidence from the sea anemone, Nematostella vectensis.
Joseph F. Ryan,Joseph F. Ryan,Maureen E. Mazza,Kevin Pang,David Q. Matus,Andreas D. Baxevanis,Mark Q. Martindale,John R. Finnerty +7 more
TL;DR: Phylogenetic, developmental, and genomic analyses on the cnidarian sea anemone Nematostella vectensis challenge recent claims that the Hox code is a bilaterian invention and that no “true” Hox genes exist in the phylum Cnidaria.
Journal ArticleDOI
The mid-developmental transition and the evolution of animal body plans
Michal Levin,Leon Anavy,Alison G. Cole,Eitan Winter,Natalia Mostov,Sally Khair,Naftalie Senderovich,Ekaterina Kovalev,David H. Silver,Martin E. Feder,Selene L. Fernandez-Valverde,Nagayasu Nakanishi,David Simmons,Oleg Simakov,Tomas Larsson,Shang-Yun Liu,Ayelet Jerafi-Vider,Karina Yaniv,Joseph F. Ryan,Mark Q. Martindale,Jochen C. Rink,Detlev Arendt,Sandie M. Degnan,Bernard M. Degnan,Tamar Hashimshony,Itai Yanai +25 more
TL;DR: It is proposed that a phylum may be defined as a collection of species whose gene expression at the mid-developmental transition is both highly conserved among them, yet divergent relative to other species.
Journal ArticleDOI
The breast cancer information core: database design, structure, and scope.
TL;DR: The Breast Cancer Information Core (BIC) is an open access, on‐line mutation database for breast cancer susceptibility genes that provides technical support in the form of mutation detection protocols, primer sequences, and reagent access.