J
Joshua D. Noe
Researcher at Medical College of Wisconsin
Publications - 58
Citations - 2595
Joshua D. Noe is an academic researcher from Medical College of Wisconsin. The author has contributed to research in topics: Ulcerative colitis & Inflammatory bowel disease. The author has an hindex of 20, co-authored 52 publications receiving 1818 citations. Previous affiliations of Joshua D. Noe include Indiana University & Riley Hospital for Children.
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Journal ArticleDOI
Prediction of complicated disease course for children newly diagnosed with Crohn's disease: a multicentre inception cohort study
Subra Kugathasan,Lee A. Denson,Thomas D. Walters,Mi-Ok Kim,Urko M. Marigorta,Melanie Schirmer,Melanie Schirmer,Kajari Mondal,Chunyan Liu,Anne M. Griffiths,Joshua D. Noe,Wallace Crandall,Scott B. Snapper,Shervin Rabizadeh,Joel R. Rosh,Jason Shapiro,Stephen L. Guthery,David R. Mack,Richard Kellermayer,Michael D. Kappelman,Steven J. Steiner,Dedrick E. Moulton,David Keljo,Stanley N. Cohen,Maria Oliva-Hemker,Melvin B. Heyman,Anthony R. Otley,Susan S. Baker,Jonathan Evans,Barbara S. Kirschner,Ashish S. Patel,David Ziring,Bruce C. Trapnell,Francisco A. Sylvester,Michael C. Stephens,Robert N. Baldassano,James Markowitz,Judy H. Cho,Ramnik J. Xavier,Ramnik J. Xavier,Ramnik J. Xavier,Curtis Huttenhower,Curtis Huttenhower,Bruce J. Aronow,Greg Gibson,Jeffrey S. Hyams,Marla Dubinsky +46 more
TL;DR: The findings support the usefulness of risk stratification of paediatric patients with Crohn's disease at diagnosis, and selection of anti-TNFα therapy.
Journal ArticleDOI
Pediatric Crohn disease patients exhibit specific ileal transcriptome and microbiome signature
Yael Haberman,Timothy L. Tickle,Phillip J. Dexheimer,Mi-Ok Kim,Dora Tang,Rebekah Karns,Robert N. Baldassano,Joshua D. Noe,Joel R. Rosh,James Markowitz,Melvin B. Heyman,Anne M. Griffiths,Wallace Crandall,David R. Mack,Susan S. Baker,Curtis Huttenhower,David J. Keljo,Jeffrey S. Hyams,Subramaniam Kugathasan,Thomas D. Walters,Bruce J. Aronow,Ramnik J. Xavier,Dirk Gevers,Lee A. Denson +23 more
TL;DR: These CD-specific host and microbe profiles identify the ileum as the primary inductive site for all forms of CD and may direct prognostic and therapeutic approaches.
Journal ArticleDOI
Ulcerative colitis mucosal transcriptomes reveal mitochondriopathy and personalized mechanisms underlying disease severity and treatment response
Yael Haberman,Yael Haberman,Rebekah Karns,Phillip J. Dexheimer,Melanie Schirmer,Judith Somekh,Judith Somekh,Ingrid Jurickova,Tzipi Braun,Elizabeth Novak,Laura Bauman,Laura Bauman,Margaret H. Collins,Angela Mo,Michael J. Rosen,Erin Bonkowski,Nathan Gotman,Alison Marquis,Mason Nistel,Paul A. Rufo,Susan S. Baker,Cary G. Sauer,James Markowitz,Marian D. Pfefferkorn,Joel R. Rosh,Brendan M. Boyle,David R. Mack,Robert N. Baldassano,Sapana Shah,Neal S. Leleiko,Melvin B. Heyman,Anne M. Grifiths,Ashish S. Patel,Joshua D. Noe,Bruce J. Aronow,Subra Kugathasan,Thomas D. Walters,Greg Gibson,Sonia Davis Thomas,Sonia Davis Thomas,Kevin P. Mollen,Shai S. Shen-Orr,Curtis Huttenhower,Ramnik J. Xavier,Jeffrey S. Hyams,Lee A. Denson +45 more
TL;DR: In this article, the authors used RNAseq to define pre-treatment rectal gene expression, and fecal microbiota profiles, in 206 pediatric ulcerative colitis patients receiving standardised therapy.
Journal ArticleDOI
Compositional and Temporal Changes in the Gut Microbiome of Pediatric Ulcerative Colitis Patients Are Linked to Disease Course.
Melanie Schirmer,Melanie Schirmer,Lee A. Denson,Hera Vlamakis,Hera Vlamakis,Hera Vlamakis,Eric A. Franzosa,Eric A. Franzosa,Sonia Davis Thomas,Nathan Gotman,Paul A. Rufo,Susan S. Baker,Cary G. Sauer,James Markowitz,Marian D. Pfefferkorn,Maria Oliva-Hemker,Joel R. Rosh,Anthony R. Otley,Brendan M. Boyle,David R. Mack,Robert N. Baldassano,David J. Keljo,Neal Leleiko,Melvin B. Heyman,Anne M. Griffiths,Ashish S. Patel,Joshua D. Noe,Subra Kugathasan,Thomas D. Walters,Curtis Huttenhower,Curtis Huttenhower,Jeffrey S. Hyams,Ramnik J. Xavier,Ramnik J. Xavier,Ramnik J. Xavier +34 more
TL;DR: The role of the gut microbiome in disease course for 405 pediatric, new-onset, treatment-naive ulcerative colitis patients was evaluated in PROTECT as mentioned in this paper, where patients were monitored for 1 year upon treatment initiation, and microbial taxonomic composition was analyzed from fecal samples and rectal biopsies.
Journal ArticleDOI
Transcriptional risk scores link GWAS to eQTLs and predict complications in Crohn's disease.
Urko M. Marigorta,Lee A. Denson,Jeffrey S. Hyams,Kajari Mondal,Jarod Prince,Thomas D. Walters,Anne M. Griffiths,Joshua D. Noe,Wallace Crandall,Joel R. Rosh,David R. Mack,Richard Kellermayer,Melvin B. Heyman,Susan S. Baker,Michael C. Stephens,Robert N. Baldassano,James Markowitz,Mi-Ok Kim,Marla Dubinsky,Judy H. Cho,Bruce J. Aronow,Subra Kugathasan,Greg Gibson +22 more
TL;DR: It is shown that TRSs based on genes regulated by variants linked to inflammatory bowel disease not only outperform genetic risk scores (GRSs) in distinguishing Crohn's disease from healthy samples, but also serve to identify patients who in time will progress to complicated disease.