K
Karsten Schnatbaum
Researcher at Jerini
Publications - 44
Citations - 3681
Karsten Schnatbaum is an academic researcher from Jerini. The author has contributed to research in topics: Medicine & Proteome. The author has an hindex of 15, co-authored 40 publications receiving 2652 citations. Previous affiliations of Karsten Schnatbaum include University of Mainz.
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Journal ArticleDOI
Mass-spectrometry-based draft of the human proteome
Mathias Wilhelm,Judith Schlegl,Hannes Hahne,Amin Moghaddas Gholami,Marcus Lieberenz,Mikhail M. Savitski,Emanuel Ziegler,Lars Butzmann,Siegfried Gessulat,Harald Marx,Toby Mathieson,Simone Lemeer,Karsten Schnatbaum,Ulf Reimer,Holger Wenschuh,Martin Mollenhauer,Julia Slotta-Huspenina,Joos-Hendrik Boese,Marcus Bantscheff,Anja Gerstmair,Franz Faerber,Bernhard Kuster +21 more
TL;DR: A mass-spectrometry-based draft of the human proteome and a public, high-performance, in-memory database for real-time analysis of terabytes of big data, called ProteomicsDB are presented, which enables navigation of proteomes, provides biological insight and fosters the development of proteomic technology.
Journal ArticleDOI
Prosit: proteome-wide prediction of peptide tandem mass spectra by deep learning.
Siegfried Gessulat,Tobias Schmidt,Daniel P Zolg,Patroklos Samaras,Karsten Schnatbaum,Johannes Zerweck,Tobias Knaute,Julia Rechenberger,Bernard Delanghe,Andreas Huhmer,Ulf Reimer,Hans-Christian Ehrlich,Stephan Aiche,Bernhard Kuster,Mathias Wilhelm +14 more
TL;DR: A deep learning–based tool, Prosit, predicts high-quality peptide tandem mass spectra, improving peptide-identification performance compared with that of traditional proteomics analysis methods.
Journal ArticleDOI
A deep proteome and transcriptome abundance atlas of 29 healthy human tissues
Dongxue Wang,Basak Eraslan,Basak Eraslan,Thomas Wieland,Björn M. Hallström,Thomas A. Hopf,Daniel P Zolg,Jana Zecha,Anna Asplund,Li-hua Li,Chen Meng,Martin Frejno,Tobias Schmidt,Karsten Schnatbaum,Mathias Wilhelm,Fredrik Pontén,Mathias Uhlén,Julien Gagneur,Hannes Hahne,Bernhard Kuster,Bernhard Kuster +20 more
TL;DR: A quantitative proteome and transcriptome abundance atlas of 29 paired healthy human tissues from the Human Protein Atlas project revealed that hundreds of proteins, particularly in testis, could not be detected even for highly expressed mRNAs and that protein expression is often more stable across tissues than that of transcripts.
Journal ArticleDOI
Building ProteomeTools based on a complete synthetic human proteome
Daniel P Zolg,Mathias Wilhelm,Karsten Schnatbaum,Johannes Zerweck,Tobias Knaute,Bernard Delanghe,Derek J. Bailey,Siegfried Gessulat,Hans-Christian Ehrlich,Maximilian Weininger,Peng Yu,Judith Schlegl,Karl Kramer,Tobias Schmidt,Ulrike Kusebauch,Eric W. Deutsch,Ruedi Aebersold,Ruedi Aebersold,Robert L. Moritz,Holger Wenschuh,Thomas Moehring,Stephan Aiche,Andreas Huhmer,Ulf Reimer,Bernhard Kuster,Bernhard Kuster +25 more
TL;DR: ProteomeTools, a project building molecular and digital tools from the human proteome to facilitate biomedical research, is described and the generation and multimodal liquid chromatography–tandem mass spectrometry analysis of >330,000 synthetic tryptic peptides representing essentially all canonical human gene products is reported.
Journal ArticleDOI
Cross-reactive CD4 + T cells enhance SARS-CoV-2 immune responses upon infection and vaccination.
Lucie Loyal,Lucie Loyal,Julian Braun,Julian Braun,Larissa Henze,Larissa Henze,Beate Kruse,Beate Kruse,Manuela Dingeldey,Manuela Dingeldey,Ulf Reimer,Florian Kern,Tatjana Schwarz,Maike Mangold,Maike Mangold,Clara Unger,Clara Unger,Friederike Dörfler,Shirin Kadler,Shirin Kadler,Jennifer Rosowski,Jennifer Rosowski,Kübrah Gürcan,Kübrah Gürcan,Zehra Uyar-Aydin,Zehra Uyar-Aydin,Marco Frentsch,Florian Kurth,Florian Kurth,Karsten Schnatbaum,Maren Eckey,Stefan Hippenstiel,Andreas C. Hocke,Marcel A. Müller,Marcel A. Müller,Birgit Sawitzki,Stefan Miltenyi,Friedemann Paul,Marcus A. Mall,Holger Wenschuh,Sebastian Voigt,Christian Drosten,Christian Drosten,Roland Lauster,Roland Lauster,Nils Lachman,LE Sander,Victor M. Corman,Victor M. Corman,Jobst Röhmel,Lil Meyer-Arndt,Andreas Thiel,Andreas Thiel,Claudia Giesecke-Thiel +53 more
TL;DR: In this article, the functional relevance of preexisting cross-immunity to severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is a subject of intense debate.