Kemal Sanli

TL;DR: A Human Pathology Atlas has been created as part of the Human Protein Atlas program to explore the prognostic role of each protein-coding gene in 17 different cancers, and reveals that gene expression of individual tumors within a particular cancer varied considerably and could exceed the variation observed between distinct cancer types.

TL;DR: ITSx is introduced, a Perl‐based software tool to extract ITS1, 5.8S and ITS2 – as well as full‐length ITS sequences – from both Sanger and high‐throughput sequencing data sets, and is rich in features and written to be easily incorporated into automated sequence analysis pipelines.

TL;DR: Heterotrophic bacteria, including the majority of proteobacterial clades and Bacteroidetes, and eukaryotic macro-invertebrates were found to dominate periphyton and genes encoding enzymes that participate in anaerobic pathways, such as denitrification and methanogenesis, were detected suggesting the presence of low-oxygen micro-zones within the biofilms.

TL;DR: Fantom is a tool that allows for exploratory and comparative analysis of metagenomics abundance data integrated with metadata information and biological databases, and it can make use of any hierarchical database.

TL;DR: Five strategies to address fundamental issues in the annotation of sequence databases are proposed, to clearly separate experimentally verified and unverified sequence entries and to enable a system for tracing the origins of annotations.