M
Muhammad Arif
Researcher at Royal Institute of Technology
Publications - 84
Citations - 3529
Muhammad Arif is an academic researcher from Royal Institute of Technology. The author has contributed to research in topics: Medicine & Biology. The author has an hindex of 13, co-authored 62 publications receiving 1881 citations.
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Journal ArticleDOI
A pathology atlas of the human cancer transcriptome
Mathias Uhlén,Mathias Uhlén,Cheng Zhang,Sunjae Lee,Evelina Sjöstedt,Evelina Sjöstedt,Linn Fagerberg,Gholamreza Bidkhori,Rui Benfeitas,Muhammad Arif,Zhengtao Liu,Fredrik Edfors,Kemal Sanli,Kalle von Feilitzen,Per Oksvold,Emma Lundberg,Sophia Hober,Peter Nilsson,Johanna Sofia Margareta Mattsson,Jochen M. Schwenk,Hans Brunnström,Bengt Glimelius,Tobias Sjöblom,Per-Henrik Edqvist,Dijana Djureinovic,Patrick Micke,Cecilia Lindskog,Adil Mardinoglu,Adil Mardinoglu,Fredrik Pontén +29 more
TL;DR: A Human Pathology Atlas has been created as part of the Human Protein Atlas program to explore the prognostic role of each protein-coding gene in 17 different cancers, and reveals that gene expression of individual tumors within a particular cancer varied considerably and could exceed the variation observed between distinct cancer types.
Journal ArticleDOI
A single-cell type transcriptomics map of human tissues.
Max J. Karlsson,Cheng Zhang,Loren Méar,Wen Zhong,Andreas Digre,Borbala Katona,Evelina Sjöstedt,Lynn M. Butler,Jacob Odeberg,Philip Dusart,Fredrik Edfors,Per Oksvold,Kalle von Feilitzen,Martin Zwahlen,Muhammad Arif,Ozlem Altay,Xiangyu Li,Mehmet Ozcan,Adil Mardinoglu,Linn Fagerberg,Jan Mulder,Yonglun Luo,Fredrik Pontén,Mathias Uhlén,Mathias Uhlén,Cecilia Lindskog +25 more
TL;DR: In this article, the authors combined single-cell transcriptomics analysis with spatial antibody-based protein profiling to create a high-resolution singlecell type map of human tissues, which was used to explore the expression of human protein-coding genes in 192 individual cell type clusters.
Journal ArticleDOI
Spatiotemporal dissection of the cell cycle with single-cell proteogenomics
Diana Mahdessian,Anthony J. Cesnik,Anthony J. Cesnik,Christian Gnann,Frida Danielsson,Lovisa Stenström,Muhammad Arif,Cheng Zhang,Trang Le,Fredric Johansson,Rutger Shutten,Anna Bäckström,Ulrika Axelsson,Peter Thul,Nathan H. Cho,Oana Carja,Oana Carja,Mathias Uhlén,Adil Mardinoglu,Adil Mardinoglu,Charlotte Stadler,Cecilia Lindskog,Burcu Ayoglu,Manuel D. Leonetti,Fredrik Pontén,Devin P. Sullivan,Emma Lundberg,Emma Lundberg +27 more
TL;DR: A comprehensive, spatiotemporal map of human proteomic heterogeneity by integrating proteomics at subcellular resolution with single-cell transcriptomics and precise temporal measurements of individual cells in the cell cycle is presented in this article.
Journal ArticleDOI
Integration of molecular profiles in a longitudinal wellness profiling cohort
Abdellah Tebani,Anders Gummesson,Anders Gummesson,Wen Zhong,Ina Schuppe Koistinen,Ina Schuppe Koistinen,Tadepally Lakshmikanth,Lisa M. Olsson,Fredrik Boulund,Maja Neiman,Hans Stenlund,Cecilia Hellström,Max J. Karlsson,Muhammad Arif,Tea Dodig-Crnković,Adil Mardinoglu,Adil Mardinoglu,Sunjae Lee,Cheng Zhang,Yang Chen,Axel Olin,Jaromír Mikeš,Hanna Danielsson,Kalle von Feilitzen,Per-Anders Jansson,Per-Anders Jansson,Oskar Angerås,Oskar Angerås,Mikael Huss,Sanela Kjellqvist,Jacob Odeberg,Fredrik Edfors,Valentina Tremaroli,Björn Forsström,Jochen M. Schwenk,Peter Nilsson,Thomas Moritz,Fredrik Bäckhed,Fredrik Bäckhed,Fredrik Bäckhed,Lars Engstrand,Petter Brodin,Göran Bergström,Göran Bergström,Mathias Uhlén,Mathias Uhlén,Linn Fagerberg +46 more
TL;DR: The analyses show that each individual has a unique and stable plasma protein profile throughout the study period and that many individuals also show distinct profiles with regards to the other omics datasets, with strong underlying connections between the blood proteome and the clinical chemistry parameters.
Journal ArticleDOI
TCSBN: a database of tissue and cancer specific biological networks.
Sunjae Lee,Cheng Zhang,Muhammad Arif,Zhengtao Liu,Rui Benfeitas,Gholamreza Bidkhori,Sumit Deshmukh,Mohamed Al Shobky,Alen Lovric,Jan Borén,Jens Nielsen,Jens Nielsen,Mathias Uhlén,Adil Mardinoglu,Adil Mardinoglu +14 more
TL;DR: Biological networks provide new opportunities for understanding the cellular biology in both health and disease states and can be employed in the analysis of omics data, provide detailed insight into disease mechanisms by identifying the key biological components and eventually can be used in the development of efficient treatment strategies.