K
Kevin L. Schneider
Researcher at University of Hawaii
Publications - 8
Citations - 1560
Kevin L. Schneider is an academic researcher from University of Hawaii. The author has contributed to research in topics: Genome & Centromere. The author has an hindex of 8, co-authored 8 publications receiving 1141 citations. Previous affiliations of Kevin L. Schneider include University of Hawaii at Manoa.
Papers
More filters
Journal ArticleDOI
Improved maize reference genome with single-molecule technologies
Yinping Jiao,Paul Peluso,Jinghua Shi,Tiffany Y. Liang,Michelle C. Stitzer,Bo Wang,Michael S. Campbell,Joshua C. Stein,Xuehong Wei,Chen-Shan Chin,Katherine E. Guill,Michael Regulski,Sunita Kumari,Andrew Olson,Jonathan I. Gent,Kevin L. Schneider,Thomas K. Wolfgruber,Michael R. May,Nathan M. Springer,Eric Antoniou,W. Richard McCombie,Gernot G. Presting,Michael D. McMullen,Jeffrey Ross-Ibarra,R. Kelly Dawe,Alex Hastie,David R. Rank,Doreen Ware,Doreen Ware +28 more
TL;DR: The assembly and annotation of a reference genome of maize is reported, using single-molecule real-time sequencing and high-resolution optical mapping to identify transposable element lineage expansions that are unique to maize.
Posted ContentDOI
Improved maize reference genome with single molecule technologies
Yinping Jiao,Paul Peluso,Jinghua Shi,Tiffany Y. Liang,Michelle C. Stitzer,Bo Wang,Michael S. Campbell,Joshua C. Stein,Xuehong Wei,Chen-Shan Chin,Katherine E. Guill,Michael Regulski,Sunita Kumari,Andrew Olson,Jonathan I. Gent,Kevin L. Schneider,Thomas K. Wolfgruber,Michael R. May,Nathan M. Springer,Eric Antoniou,W. Richard McCombie,Gernot G. Presting,Michael D. McMullen,Jeffrey Ross-Ibarra,R. Kelly Dawe,Alex Hastie,David R. Rank,Doreen Ware +27 more
TL;DR: In this paper, the assembly and annotation of maize, a genetic and agricultural model species, using Single Molecule Real-Time (SMRT) sequencing and high-resolution optical mapping is reported.
Journal ArticleDOI
Maize centromere structure and evolution: sequence analysis of centromeres 2 and 5 reveals dynamic Loci shaped primarily by retrotransposons.
Thomas K. Wolfgruber,Anupma Sharma,Kevin L. Schneider,Patrice S. Albert,Dal-Hoe Koo,Jinghua Shi,Zhi Gao,Fangpu Han,Hye-Ran Lee,Ronghui Xu,Jamie Allison,James A. Birchler,Jiming Jiang,R. Kelly Dawe,Gernot G. Presting +14 more
TL;DR: It is shown that maize centromeres are fluid genomic regions whose borders are heavily influenced by the interplay of retrotransposons and epigenetic marks, and it is proposed that CRMs may be involved in removal of centromeric DNA, invasion of centromere by non-CRM retro Transposons, and local repositioning of the CENH3.
Journal ArticleDOI
Inbreeding drives maize centromere evolution.
TL;DR: Evidence strongly suggests that inbreeding, favored by postdomestication selection for centromere-linked genes affecting key domestication or agricultural traits, drives replacement of the tandem centromeres repeats in maize and other crop plants.
Journal ArticleDOI
Sustained retrotransposition is mediated by nucleotide deletions and interelement recombinations
TL;DR: It is shown that the expansion of the CRM1 retrotransposon subfamily in the ancient allotetraploid crop plant corn is linked to the repeated formation of novel recombinant elements derived from two parental retrotransposed genotypes, which may have been brought together during the hybridization of two sympatric species that make up the present day corn genome, thus revealing a unique mechanism linking polyploidy and retrotransposition.