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Andrew Olson
Researcher at Cold Spring Harbor Laboratory
Publications - 50
Citations - 4933
Andrew Olson is an academic researcher from Cold Spring Harbor Laboratory. The author has contributed to research in topics: Gene & Genome. The author has an hindex of 24, co-authored 42 publications receiving 3597 citations. Previous affiliations of Andrew Olson include Stanford University.
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Journal ArticleDOI
Improved maize reference genome with single-molecule technologies
Yinping Jiao,Paul Peluso,Jinghua Shi,Tiffany Y. Liang,Michelle C. Stitzer,Bo Wang,Michael S. Campbell,Joshua C. Stein,Xuehong Wei,Chen-Shan Chin,Katherine E. Guill,Michael Regulski,Sunita Kumari,Andrew Olson,Jonathan I. Gent,Kevin L. Schneider,Thomas K. Wolfgruber,Michael R. May,Nathan M. Springer,Eric Antoniou,W. Richard McCombie,Gernot G. Presting,Michael D. McMullen,Jeffrey Ross-Ibarra,R. Kelly Dawe,Alex Hastie,David R. Rank,Doreen Ware,Doreen Ware +28 more
TL;DR: The assembly and annotation of a reference genome of maize is reported, using single-molecule real-time sequencing and high-resolution optical mapping to identify transposable element lineage expansions that are unique to maize.
Journal ArticleDOI
Unveiling the complexity of the maize transcriptome by single-molecule long-read sequencing
Bo Wang,Elizabeth Tseng,Michael Regulski,Tyson A. Clark,Ting Hon,Yinping Jiao,Zhenyuan Lu,Andrew Olson,Joshua C. Stein,Doreen Ware,Doreen Ware +10 more
TL;DR: The results show that characterization of the maize B73 transcriptome is far from complete, and that maize gene expression is more complex than previously thought.
Journal ArticleDOI
Ensembl Genomes 2018: an integrated omics infrastructure for non-vertebrate species.
Paul J. Kersey,James E. Allen,Alexis Allot,Matthieu Barba,Sanjay Boddu,Bruce J. Bolt,Denise Carvalho-Silva,Mikkel B. Christensen,Paul Davis,Christoph Grabmueller,Navin Kumar,Zicheng Liu,Thomas Maurel,Ben Moore,Mark D. McDowall,Uma Maheswari,Guy Naamati,Victoria L. Newman,Chuang Kee Ong,Michael Paulini,Helder Pedro,Emily Perry,Matthew Russell,Helen Sparrow,Electra Tapanari,Kieron Taylor,Alessandro Vullo,Gareth Williams,Amonida Zadissia,Andrew Olson,Joshua C. Stein,Sharon Wei,Marcela K. Tello-Ruiz,Doreen Ware,Doreen Ware,Aurelien Luciani,Simon C. Potter,Robert D. Finn,Martin Urban,Kim E. Hammond-Kosack,Dan Bolser,Nishadi De Silva,Kevin L. Howe,Nicholas Langridge,Gareth Maslen,Daniel M. Staines,Andrew D. Yates +46 more
TL;DR: This paper provides an update to the previous publications about the Ensembl Genomes resource, with a focus on recent developments and expansions, including the incorporation of almost 20 000 additional genome sequences and over 35 000 tracks of RNA-Seq data.
Journal ArticleDOI
Ensembl Genomes 2020-enabling non-vertebrate genomic research.
Kevin L. Howe,Bruno Contreras-Moreira,Nishadi De Silva,Gareth Maslen,Wasiu Akanni,James E. Allen,Jorge Alvarez-Jarreta,Matthieu Barba,Dan Bolser,Lahcen Cambell,Manuel Carbajo,Marc Chakiachvili,Mikkel B. Christensen,Carla Cummins,Alayne Cuzick,Paul Davis,Silvie Fexova,Astrid Gall,Nancy George,Laurent Gil,Parul Gupta,Kim E. Hammond-Kosack,Erin Haskell,Sarah E. Hunt,Pankaj Jaiswal,Sophie Helen Janacek,Paul J. Kersey,Nick Langridge,Uma Maheswari,Thomas Maurel,Mark D. McDowall,Benjamin Moore,Matthieu Muffato,Guy Naamati,Sushma Naithani,Andrew Olson,Irene Papatheodorou,Mateus Patricio,Michael Paulini,Helder Pedro,Emily Perry,Justin Preece,Marc Rosello,Matthew Russell,Vasily Sitnik,Daniel M. Staines,Joshua C. Stein,Marcela K. Tello-Ruiz,Stephen J. Trevanion,Martin Urban,Sharon Wei,Doreen Ware,Doreen Ware,Gary Williams,Andrew D. Yates,Paul Flicek +55 more
TL;DR: An overview of Ensembl Genomes is provided, with a focus on recent developments, which include the continued growth, more robust and reproducible sets of orthologues and paralogues, and enriched views of gene expression and gene function in plants.
Posted ContentDOI
Improved maize reference genome with single molecule technologies
Yinping Jiao,Paul Peluso,Jinghua Shi,Tiffany Y. Liang,Michelle C. Stitzer,Bo Wang,Michael S. Campbell,Joshua C. Stein,Xuehong Wei,Chen-Shan Chin,Katherine E. Guill,Michael Regulski,Sunita Kumari,Andrew Olson,Jonathan I. Gent,Kevin L. Schneider,Thomas K. Wolfgruber,Michael R. May,Nathan M. Springer,Eric Antoniou,W. Richard McCombie,Gernot G. Presting,Michael D. McMullen,Jeffrey Ross-Ibarra,R. Kelly Dawe,Alex Hastie,David R. Rank,Doreen Ware +27 more
TL;DR: In this paper, the assembly and annotation of maize, a genetic and agricultural model species, using Single Molecule Real-Time (SMRT) sequencing and high-resolution optical mapping is reported.