K
Kyle Siebenthall
Researcher at University of Washington
Publications - 8
Citations - 5184
Kyle Siebenthall is an academic researcher from University of Washington. The author has contributed to research in topics: Gene & Epigenomics. The author has an hindex of 5, co-authored 6 publications receiving 4282 citations.
Papers
More filters
Journal ArticleDOI
Integrative analysis of 111 reference human epigenomes
Anshul Kundaje,Wouter Meuleman,Wouter Meuleman,Jason Ernst,Misha Bilenky,Angela Yen,Angela Yen,Alireza Heravi-Moussavi,Pouya Kheradpour,Pouya Kheradpour,Zhizhuo Zhang,Zhizhuo Zhang,Jianrong Wang,Jianrong Wang,Michael J. Ziller,Viren Amin,John W. Whitaker,Matthew D. Schultz,Lucas D. Ward,Lucas D. Ward,Abhishek Sarkar,Abhishek Sarkar,Gerald Quon,Gerald Quon,Richard Sandstrom,Matthew L. Eaton,Matthew L. Eaton,Yi-Chieh Wu,Yi-Chieh Wu,Andreas R. Pfenning,Andreas R. Pfenning,Xinchen Wang,Xinchen Wang,Melina Claussnitzer,Melina Claussnitzer,Yaping Liu,Yaping Liu,Cristian Coarfa,R. Alan Harris,Noam Shoresh,Charles B. Epstein,Elizabeta Gjoneska,Elizabeta Gjoneska,Danny Leung,Wei Xie,R. David Hawkins,Ryan Lister,Chibo Hong,Philippe Gascard,Andrew J. Mungall,Richard A. Moore,Eric Chuah,Angela Tam,Theresa K. Canfield,R. Scott Hansen,Rajinder Kaul,Peter J. Sabo,Mukul S. Bansal,Mukul S. Bansal,Mukul S. Bansal,Annaick Carles,Jesse R. Dixon,Kai How Farh,Soheil Feizi,Soheil Feizi,Rosa Karlic,Ah Ram Kim,Ah Ram Kim,Ashwinikumar Kulkarni,Daofeng Li,Rebecca F. Lowdon,Ginell Elliott,Tim R. Mercer,Shane Neph,Vitor Onuchic,Paz Polak,Paz Polak,Nisha Rajagopal,Pradipta R. Ray,Richard C Sallari,Richard C Sallari,Kyle Siebenthall,Nicholas A Sinnott-Armstrong,Nicholas A Sinnott-Armstrong,Michael Stevens,Robert E. Thurman,Jie Wu,Bo Zhang,Xin Zhou,Arthur E. Beaudet,Laurie A. Boyer,Philip L. De Jager,Philip L. De Jager,Peggy J. Farnham,Susan J. Fisher,David Haussler,Steven J.M. Jones,Steven J.M. Jones,Wei Li,Marco A. Marra,Michael T. McManus,Shamil R. Sunyaev,Shamil R. Sunyaev,James A. Thomson,Thea D. Tlsty,Li-Huei Tsai,Li-Huei Tsai,Wei Wang,Robert A. Waterland,Michael Q. Zhang,Lisa Helbling Chadwick,Bradley E. Bernstein,Bradley E. Bernstein,Bradley E. Bernstein,Joseph F. Costello,Joseph R. Ecker,Martin Hirst,Alexander Meissner,Aleksandar Milosavljevic,Bing Ren,John A. Stamatoyannopoulos,Ting Wang,Manolis Kellis,Manolis Kellis +123 more
TL;DR: It is shown that disease- and trait-associated genetic variants are enriched in tissue-specific epigenomic marks, revealing biologically relevant cell types for diverse human traits, and providing a resource for interpreting the molecular basis of human disease.
Journal ArticleDOI
DNase I hypersensitivity analysis of the mouse brain and retina identifies region-specific regulatory elements
Matthew S. Wilken,Joseph A. Brzezinski,Joseph A. Brzezinski,Anna La Torre,Kyle Siebenthall,Robert E. Thurman,Peter J. Sabo,Richard Sandstrom,Jeff Vierstra,Theresa K. Canfield,R. Scott Hansen,Michaël Bender,Michaël Bender,John A. Stamatoyannopoulos,Thomas A. Reh +14 more
TL;DR: These data represent an extensive catalogue of potential cis-regulatory elements within the CNS that display region and temporal specificity, as well as a set of DHSs common to CNS tissues that are likely to mark enhancers specific to each CNS region and developmental stage.
Journal ArticleDOI
Genetic association of long-chain acyl-CoA synthetase 1 variants with fasting glucose, diabetes, and subclinical atherosclerosis
Ani Manichaikul,Xin-Qun Wang,Wei Zhao,Mary K. Wojczynski,Kyle Siebenthall,John A. Stamatoyannopoulos,Danish Saleheen,Ingrid B. Borecki,Muredach P. Reilly,Stephen S. Rich,Karin E. Bornfeldt +10 more
TL;DR: Evidence in humans of ACSL1 SNPs associated with fasting glucose, diabetes, and subclinical atherosclerosis is provided and links among these traits and acyl-CoA synthesis are suggested.
Journal ArticleDOI
Integrated Functional Genomic Analysis Enables Annotation of Kidney Genome-Wide Association Study Loci.
Karsten B. Sieber,Anna Batorsky,Kyle Siebenthall,Kelly L. Hudkins,Jeff Vierstra,Shawn Sullivan,Aakash Sur,Michelle McNulty,Richard Sandstrom,Alex Reynolds,Daniel Bates,Morgan Diegel,Douglass Dunn,J. K. Nelson,Michael Buckley,Rajinder Kaul,Matthew G. Sampson,Jonathan Himmelfarb,Charles E. Alpers,Dawn Waterworth,Shreeram Akilesh +20 more
TL;DR: A powerful approach is demonstrated to functionally connect kidney disease-/trait-associated loci to their target genes by leveraging unique regulatory DNA maps and integrated epigenomic and genetic analysis and will enhance the understanding of genome regulation and its effects on gene expression in kidney disease.
Journal ArticleDOI
Integrated epigenomic profiling reveals endogenous retrovirus reactivation in renal cell carcinoma.
Kyle Siebenthall,Chris P. Miller,Jeff Vierstra,Julie Mathieu,Maria S. Tretiakova,Alex Reynolds,Richard Sandstrom,Eric Rynes,Eric Haugen,Audra K. Johnson,J. K. Nelson,Daniel Bates,Morgan Diegel,Douglas Dunn,Mark Frerker,Michael Buckley,Rajinder Kaul,Yingye Zheng,Jonathan Himmelfarb,Hannele Ruohola-Baker,Shreeram Akilesh +20 more
TL;DR: Though HIF transcription factors play a cardinal role in RCC oncogenesis, it is found that numerous transcription factors with a RCC-selective expression pattern also demonstrated evidence of HIF binding near their gene body.