A
Angela Yen
Researcher at Broad Institute
Publications - 14
Citations - 11416
Angela Yen is an academic researcher from Broad Institute. The author has contributed to research in topics: Epigenomics & X-inactivation. The author has an hindex of 9, co-authored 14 publications receiving 9336 citations. Previous affiliations of Angela Yen include Massachusetts Institute of Technology.
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Journal ArticleDOI
Integrative analysis of 111 reference human epigenomes
Anshul Kundaje,Wouter Meuleman,Wouter Meuleman,Jason Ernst,Misha Bilenky,Angela Yen,Angela Yen,Alireza Heravi-Moussavi,Pouya Kheradpour,Pouya Kheradpour,Zhizhuo Zhang,Zhizhuo Zhang,Jianrong Wang,Jianrong Wang,Michael J. Ziller,Viren Amin,John W. Whitaker,Matthew D. Schultz,Lucas D. Ward,Lucas D. Ward,Abhishek Sarkar,Abhishek Sarkar,Gerald Quon,Gerald Quon,Richard Sandstrom,Matthew L. Eaton,Matthew L. Eaton,Yi-Chieh Wu,Yi-Chieh Wu,Andreas R. Pfenning,Andreas R. Pfenning,Xinchen Wang,Xinchen Wang,Melina Claussnitzer,Melina Claussnitzer,Yaping Liu,Yaping Liu,Cristian Coarfa,R. Alan Harris,Noam Shoresh,Charles B. Epstein,Elizabeta Gjoneska,Elizabeta Gjoneska,Danny Leung,Wei Xie,R. David Hawkins,Ryan Lister,Chibo Hong,Philippe Gascard,Andrew J. Mungall,Richard A. Moore,Eric Chuah,Angela Tam,Theresa K. Canfield,R. Scott Hansen,Rajinder Kaul,Peter J. Sabo,Mukul S. Bansal,Mukul S. Bansal,Mukul S. Bansal,Annaick Carles,Jesse R. Dixon,Kai How Farh,Soheil Feizi,Soheil Feizi,Rosa Karlic,Ah Ram Kim,Ah Ram Kim,Ashwinikumar Kulkarni,Daofeng Li,Rebecca F. Lowdon,Ginell Elliott,Tim R. Mercer,Shane Neph,Vitor Onuchic,Paz Polak,Paz Polak,Nisha Rajagopal,Pradipta R. Ray,Richard C Sallari,Richard C Sallari,Kyle Siebenthall,Nicholas A Sinnott-Armstrong,Nicholas A Sinnott-Armstrong,Michael Stevens,Robert E. Thurman,Jie Wu,Bo Zhang,Xin Zhou,Arthur E. Beaudet,Laurie A. Boyer,Philip L. De Jager,Philip L. De Jager,Peggy J. Farnham,Susan J. Fisher,David Haussler,Steven J.M. Jones,Steven J.M. Jones,Wei Li,Marco A. Marra,Michael T. McManus,Shamil R. Sunyaev,Shamil R. Sunyaev,James A. Thomson,Thea D. Tlsty,Li-Huei Tsai,Li-Huei Tsai,Wei Wang,Robert A. Waterland,Michael Q. Zhang,Lisa Helbling Chadwick,Bradley E. Bernstein,Bradley E. Bernstein,Bradley E. Bernstein,Joseph F. Costello,Joseph R. Ecker,Martin Hirst,Alexander Meissner,Aleksandar Milosavljevic,Bing Ren,John A. Stamatoyannopoulos,Ting Wang,Manolis Kellis,Manolis Kellis +123 more
TL;DR: It is shown that disease- and trait-associated genetic variants are enriched in tissue-specific epigenomic marks, revealing biologically relevant cell types for diverse human traits, and providing a resource for interpreting the molecular basis of human disease.
Integrative analysis of 111 reference human epigenomes
Anshul Kundaje,Wouter Meuleman,Jason Ernst,Angela Yen,Pouya Kheradpour,Zhizhuo Zhang,Jianrong Wang,Lucas D. Ward,Abhishek Sarkar,Gerald Quon,Matthew L. Eaton,Yi-Chieh Wu,Andreas R. Pfenning,Xinchen Wang,Melina Claussnitzer,Yaping Liu,Mukul S. Bansal,Soheil Feizi-Khankandi,Ah Ram Kim,Richard C Sallari,Nicholas A Sinnott-Armstrong,Laurie A. Boyer,Elizabeta Gjoneska,Li-Huei Tsai,Manolis Kellis +24 more
TL;DR: In this article, the authors describe the integrative analysis of 111 reference human epigenomes generated as part of the NIH Roadmap Epigenomics Consortium, profiled for histone modification patterns, DNA accessibility, DNA methylation and RNA expression.
Journal ArticleDOI
Landscape of X chromosome inactivation across human tissues
Taru Tukiainen,Taru Tukiainen,Alexandra-Chloé Villani,Alexandra-Chloé Villani,Angela Yen,Angela Yen,Manuel A. Rivas,Manuel A. Rivas,Manuel A. Rivas,Jamie L. Marshall,Jamie L. Marshall,Rahul Satija,Rahul Satija,Matthew Aguirre,Matthew Aguirre,Laura D. Gauthier,Laura D. Gauthier,Mark Fleharty,Andrew Kirby,Andrew Kirby,Beryl B. Cummings,Beryl B. Cummings,Stephane E. Castel,Konrad J. Karczewski,Konrad J. Karczewski,François Aguet,Andrea Byrnes,Andrea Byrnes,Tuuli Lappalainen,Aviv Regev,Aviv Regev,Kristin G. Ardlie,Nir Hacohen,Nir Hacohen,Daniel G. MacArthur,Daniel G. MacArthur +35 more
TL;DR: It is shown that incomplete XCI affects at least 23% of X-chromosomal genes, identified seven genes that escape XCI with support from multiple lines of evidence and demonstrated that escape from XCI results in sex biases in gene expression, establishing incomplete X CI as a mechanism that is likely to introduce phenotypic diversity.
Journal ArticleDOI
Identifying Recent Adaptations in Large-Scale Genomic Data
Shamai A. Grossman,Shamai A. Grossman,Shamai A. Grossman,Kristian G. Andersen,Kristian G. Andersen,Ilya Shlyakhter,Ilya Shlyakhter,Shervin Tabrizi,Shervin Tabrizi,Sarah M. Winnicki,Sarah M. Winnicki,Angela Yen,Angela Yen,Daniel J. Park,Daniel J. Park,Dustin Griesemer,Elinor K. Karlsson,Elinor K. Karlsson,Sunny H. Wong,Moran N. Cabili,Moran N. Cabili,Richard A. Adegbola,Rameshwar N. K. Bamezai,Adrian V. S. Hill,Fredrik O. Vannberg,John L. Rinn,John L. Rinn,John L. Rinn,Eric S. Lander,Eric S. Lander,Eric S. Lander,Stephen F. Schaffner,Pardis C. Sabeti,Pardis C. Sabeti +33 more
TL;DR: One candidate nonsynonymous variant in Toll-like receptor 5 (TLR5) is experimentally characterized and it is shown that it leads to altered NF-κB signaling in response to bacterial flagellin.
Journal ArticleDOI
BRCA1 Recruitment to Transcriptional Pause Sites Is Required for R-Loop-Driven DNA Damage Repair
Elodie Hatchi,Konstantina Skourti-Stathaki,Steffen Ventz,Luca Pinello,Angela Yen,Kinga Kamieniarz-Gdula,Stoil D. Dimitrov,Shailja Pathania,Kristine M. McKinney,Matthew L. Eaton,Matthew L. Eaton,Manolis Kellis,Manolis Kellis,Sarah J. Hill,Giovanni Parmigiani,Nick J. Proudfoot,David M. Livingston +16 more
TL;DR: In this paper, the authors show that BRCA1 is recruited to R-loops that form normally over a subset of transcription termination regions, where it mediates the recruitment of a specific, physiological binding partner, senataxin.