M
Maciej F. Boni
Researcher at Pennsylvania State University
Publications - 130
Citations - 8438
Maciej F. Boni is an academic researcher from Pennsylvania State University. The author has contributed to research in topics: Population & Malaria. The author has an hindex of 42, co-authored 114 publications receiving 6261 citations. Previous affiliations of Maciej F. Boni include Princeton University & University of Oxford.
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Journal ArticleDOI
Evolutionary origins of the SARS-CoV-2 sarbecovirus lineage responsible for the COVID-19 pandemic.
Maciej F. Boni,Philippe Lemey,Xiaowei Jiang,Tommy Tsan-Yuk Lam,Blair W. Perry,Todd A. Castoe,Andrew Rambaut,David Robertson +7 more
TL;DR: SARS-CoV-2 itself is not a recombinant of any sarbecoviruses detected to date, and its receptor-binding motif appears to be an ancestral trait shared with bat viruses and not one acquired recently via recombination.
Journal ArticleDOI
An Exact Nonparametric Method for Inferring Mosaic Structure in Sequence Triplets
TL;DR: This work presents a method for rapidly calculating the distribution of Δm,n,b and demonstrates that it has comparable power to and a much improved running time over previous methods, especially in detecting recombination in large data sets.
Journal ArticleDOI
Multiple populations of artemisinin-resistant Plasmodium falciparum in Cambodia
Olivo Miotto,Jacob Almagro-Garcia,Jacob Almagro-Garcia,Jacob Almagro-Garcia,Magnus Manske,Bronwyn MacInnis,Susana Campino,K.A. Rockett,K.A. Rockett,K.A. Rockett,Chanaki Amaratunga,Pharath Lim,Seila Suon,Sokunthea Sreng,Jennifer M. Anderson,Socheat Duong,Chea Nguon,Char Meng Chuor,David S. Saunders,Youry Se,Chantap Lon,Mark M. Fukuda,Lucas Amenga-Etego,Lucas Amenga-Etego,Abraham Hodgson,Victor Asoala,Mallika Imwong,Shannon Takala-Harrison,François Nosten,François Nosten,Xin-zhuan Su,Pascal Ringwald,Frédéric Ariey,Christiane Dolecek,Tran Tinh Hien,Maciej F. Boni,Cao Quang Thai,Alfred Amambua-Ngwa,David J. Conway,David J. Conway,Abdoulaye A. Djimde,Ogobara K. Doumbo,Issaka Zongo,Jean-Bosco Ouédraogo,Daniel Alcock,Eleanor Drury,Sarah Auburn,Oliver O Koch,Mandy Sanders,Christina Hubbart,Gareth Maslen,Valentin Ruano-Rubio,Valentin Ruano-Rubio,Dushyanth Jyothi,Alistair Miles,John O'Brien,Chris Gamble,Samuel O. Oyola,Julian C. Rayner,Chris I. Newbold,Chris I. Newbold,Chris I. Newbold,Matthew Berriman,Chris C. A. Spencer,Gilean McVean,Nicholas P. J. Day,Nicholas P. J. Day,Nicholas J. White,Nicholas J. White,Delia Bethell,Arjen M. Dondorp,Arjen M. Dondorp,Christopher V. Plowe,Rick M. Fairhurst,Dominic P. Kwiatkowski,Dominic P. Kwiatkowski,Dominic P. Kwiatkowski +76 more
TL;DR: An analysis of genome variation in 825 P. falciparum samples from Asia and Africa is described that identifies an unusual pattern of parasite population structure at the epicenter of artemisinin resistance in western Cambodia, and a catalog of SNPs that show high levels of differentiation in the art Artemisinin-resistant subpopulations are provided.
Journal ArticleDOI
Impact of human mobility on the emergence of dengue epidemics in Pakistan
Amy Wesolowski,Taimur Qureshi,Maciej F. Boni,Pål Sundsøy,Michael A. Johansson,Syed Basit Rasheed,Kenth Engø-Monsen,Caroline O. Buckee +7 more
TL;DR: It is shown that an epidemiological model of dengue transmission in travelers, based on mobility data from ∼40 million mobile phone subscribers and climatic information, predicts the geographic spread and timing of epidemics throughout the country.
Posted ContentDOI
Evolutionary origins of the SARS-CoV-2 sarbecovirus lineage responsible for the COVID-19 pandemic
Maciej F. Boni,Philippe Lemey,Xiaowei Jiang,Tommy Tsan-Yuk Lam,Blair W. Perry,Todd A. Castoe,Andrew Rambaut,David Robertson +7 more
TL;DR: Estimates are obtained from three approaches that the most likely divergence date of SARS-CoV-2 from its most closely related available bat sequences ranges from 1948 to 1982, indicating that there are high levels of co-infection in horseshoe bats and that the viral pool can generate novel allele combinations and substantial genetic diversity.