M
Marc Duby
Researcher at Broad Institute
Publications - 7
Citations - 493
Marc Duby is an academic researcher from Broad Institute. The author has contributed to research in topics: Computer science & Medicine. The author has an hindex of 2, co-authored 2 publications receiving 319 citations.
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Journal ArticleDOI
Mutational processes shape the landscape of TP53 mutations in human cancer
Andrew O. Giacomelli,Andrew O. Giacomelli,Xiaoping Yang,Robert E. Lintner,James M. McFarland,Marc Duby,Jaegil Kim,Thomas P. Howard,Thomas P. Howard,David Y. Takeda,David Y. Takeda,Seav Huong Ly,Seav Huong Ly,Eejung Kim,Hugh S. Gannon,Hugh S. Gannon,Brian Hurhula,Ted Sharpe,Amy Goodale,Briana Fritchman,Scott Steelman,Francisca Vazquez,Francisca Vazquez,Aviad Tsherniak,Andrew J. Aguirre,Andrew J. Aguirre,John G. Doench,Federica Piccioni,Charles W. M. Roberts,Charles W. M. Roberts,Matthew Meyerson,Matthew Meyerson,Gad Getz,Cory M. Johannessen,David E. Root,William C. Hahn +35 more
TL;DR: Large-scale loss-of-function screens and TP53 saturation mutagenesis screens in human cancer cell lines suggest that mutational processes combine with phenotypic selection to shape the landscape of somatic mutations at the TP53 locus.
Journal ArticleDOI
Prospective functional classification of all possible missense variants in PPARG
Amit R. Majithia,Ben Tsuda,Maura Agostini,Keerthana Gnanapradeepan,Robert H. Rice,Gina M. Peloso,Gina M. Peloso,Kashyap A. Patel,Xiaolan Zhang,Marjoleine F. Broekema,Nick Patterson,Marc Duby,Ted Sharpe,Eric Kalkhoven,Evan D. Rosen,Evan D. Rosen,Inês Barroso,Sian Ellard,Sian Ellard,Sekar Kathiresan,Stephen O'Rahilly,Krishna Chatterjee,Jose C. Florez,Tarjei S. Mikkelsen,Tarjei S. Mikkelsen,David B. Savage,David Altshuler +26 more
TL;DR: Saturation mutagenesis and prospective experimental characterization can support immediate diagnostic interpretation of newly discovered missense variants in disease-related genes.
Journal ArticleDOI
Progress toward a universal biomedical data translator
Karamarie Fecho,Anne Thessen,Sergio E. Baranzini,Chris Bizon,Jenn J. Hadlock,Sui Huang,Ryan Roper,Noel Southall,Casey N. Ta,Paul B. Watkins,Mark D Williams,Hao Xu,William Byrd,Vlado Dančík,Marc Duby,Michel Dumontier,Gustavo Glusman,Nomi L. Harris,Eugene W. Hinderer,Greg Hyde,Adam J. Johs,Andrew I. Su,Guan-Zhou Qin,Qian Zhu +23 more
TL;DR: The current Translator system, capable of integrating existing biomedical data sets and “translating” those data into insights intended to augment human reasoning and accelerate translational science, is described and compared to state‐of‐the‐art, biomedical graph‐based question‐answering systems.
Journal ArticleDOI
The Type 2 Diabetes Knowledge Portal: An open access genetic resource dedicated to type 2 diabetes and related traits.
Maria C. Costanzo,Marcin von Grotthuss,Jeffrey Massung,Dongkeun Jang,Lizz Caulkins,Ryan Koesterer,Clint Gilbert,Ryan P. Welch,Parul Kudtarkar,Quy Hoang,Andrew P. Boughton,Preeti Singh,Ying Sun,Marc Duby,Annie Moriondo,Trang Nguyen,Patrick Smadbeck,Benjamin Alexander,Mackenzie E Brandes,Mary Carmichael,Peter Dornbos,Todd Green,Kenneth C. Huellas-Bruskiewicz,Yue Ji,Alexandria Kluge,Aoife McMahon,Josep M. Mercader,Oliver Ruebenacker,Sebanti Sengupta,Dylan Spalding,Daniel Taliun,Philip Smith,Melissa K. Thomas,Beena Akolkar,M. Julia Brosnan,Andriy Cherkas,Audrey Y. Chu,Eric B. Fauman,Caroline S. Fox,Tania Nayak Kamphaus,Melissa R. Miller,Lynette Qu Nguyen,Afshin Parsa,Dermot F. Reilly,Hartmut Ruetten,David Wholley,Norann A. Zaghloul,Gonçalo R. Abecasis,David Altshuler,Thomas M. Keane,Mark I. McCarthy,Kyle J. Gaulton,Jose C. Florez,Michael Boehnke,Noël P. Burtt,Nicholette Allred,Jennifer E. Below,Richard N. Bergman,Joline W.J. Beulens,John Blangero,Krister Bokvist,Erwin P. Bottinger,Donald W. Bowden,Christopher Brown,Kenneth T. Bruskiewicz,Ines dos Santos Cebola,John C. Chambers,Yii-Der Ida Chen,Chris P. Clark,Melina Claussnitzer,Nancy J. Cox,Marcel den Hoed,Duc Tuan Dong,Ravindranath Duggirala,Josée Dupuis,Petra J. M. Elders,Jesse M. Engreitz,Jorge Ferrer,Jason Flannick,Paul Flicek,Matthew Flickinger,Timothy M. Frayling,Kelly A. Frazer,Anna L. Gloyn,Craig L. Hanis,Robert Hanson,Andrew T. Hattersley,Hae Kyung Im,Sidra Iqbal,Suzanne B.R. Jacobs,Tadeusz Jordan,Tania Nayak Kamphaus,Fredrik Karpe,Seung K. Kim,Kasper Lage,Leslie A. Lange,Michael Lazar,Donna E. Lehman,Ching-Ti Liu,Ruth J. F. Loos,Ronald C.W. Ma,Patrick MacDonald,Matthew T. Maurano,Gil McVean,James B. Meigs,Braxton D. Mitchell,Karen L. Mohlke,Samuel Morabito,Claire Morgan,Shannon E. Mullican,Sharvari Narendra,Maggie C.Y. Ng,Colin N. A. Palmer,Stephen C. J. Parker,Antonio Parrado,Aaron C. Pawlyk,Ewan R. Pearson,Andrew S. Plump,Michael A. Province,Thomas Quertermous,Susan Redline,Bing Ren,Stephen S. Rich,J. Brent Richards,Jerome I. Rotter,Rany M. Salem,Maike Sander,Michael Sanders,Dharambir K. Sanghera,Laura J. Scott,David Siedzik,Xueling Sim,Robert Sladek,Kerrin S. Small,Peter Stein,Heather M. Stringham,Katalin Susztak,Leen M 't Hart,Kent D. Taylor,Jennifer A. Todd,Miriam S. Udler,Benjamin F. Voight,Andre Wan,Kaan Yuksel +143 more
TL;DR: The Type 2 Diabetes Knowledge Portal (T2DKP) as discussed by the authors is a public resource of genetic datasets and genomic annotations dedicated to type 2 diabetes and related traits, which can be used for access to complex disease genetic results.
Journal ArticleDOI
“Big Map Idea”: Diasporic Currents in South African Music
TL;DR: The authors examines notions of diaspora under three broad headings: diasporic currents within the country, diasoric flows from "outside" (indentured labor from India for Natal’s sugar plantations), and phenomenological reflections on the interwovenness of place and culture.