M
Martin Kollmar
Researcher at Max Planck Society
Publications - 70
Citations - 2963
Martin Kollmar is an academic researcher from Max Planck Society. The author has contributed to research in topics: Myosin & Gene. The author has an hindex of 28, co-authored 68 publications receiving 2524 citations. Previous affiliations of Martin Kollmar include Heidelberg University.
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Journal ArticleDOI
A novel hybrid gene prediction method employing protein multiple sequence alignments
TL;DR: This work extended the gene prediction software AUGUSTUS by a method that employs block profiles generated from multiple sequence alignments as a protein signature to improve the accuracy of the prediction.
Journal ArticleDOI
Drawing the tree of eukaryotic life based on the analysis of 2,269 manually annotated myosins from 328 species
Florian Odronitz,Martin Kollmar +1 more
TL;DR: This approach is expected to result in superior accuracy compared to single-gene or phylogenomic analyses because the orthology problem is resolved and a strong determinant not depending on any technical uncertainties is incorporated, the class distribution.
Journal ArticleDOI
Genomic innovations, transcriptional plasticity and gene loss underlying the evolution and divergence of two highly polyphagous and invasive Helicoverpa pest species
Stephen L. Pearce,David F. Clarke,David F. Clarke,Peter D. East,Samia Elfekih,Karl H.J. Gordon,Lars S. Jermiin,Angela McGaughran,Angela McGaughran,John G. Oakeshott,A. Papanikolaou,A. Papanikolaou,Omaththage P. Perera,Rahul V. Rane,Rahul V. Rane,Stephen Richards,Wee Tek Tay,Tom Walsh,Alisha Anderson,Craig Anderson,Craig Anderson,Sassan Asgari,Philip G. Board,Anne Bretschneider,Peter M. Campbell,Thomas Chertemps,Thomas Chertemps,John T. Christeller,Christopher W. Coppin,Sharon Downes,G. Duan,Claire A. Farnsworth,Robert T. Good,L. B. Han,Y. C. Han,Y. C. Han,Klas Hatje,Irene Horne,Y. P. Huang,Daniel S.T. Hughes,Emmanuelle Jacquin-Joly,William James,Shalini N. Jhangiani,Martin Kollmar,Suyog S. Kuwar,S. Li,N-Y. Liu,N-Y. Liu,Martine Maïbèche,Martine Maïbèche,Jason R. Miller,Nicolas Montagné,Trent Perry,Jiaxin Qu,S. V. Song,Granger G. Sutton,Heiko Vogel,Brian P. Walenz,Wei Xu,Wei Xu,H-J. Zhang,H-J. Zhang,Z. Zou,Philip J. Batterham,Owain R. Edwards,René Feyereisen,Richard A. Gibbs,David G. Heckel,Annette McGrath,Charles Robin,Steven E. Scherer,Kim C. Worley,Yidong Wu +72 more
TL;DR: The extreme polyphagy of the two heliothines is associated with extensive amplification and neofunctionalisation of genes involved in host finding and use, coupled with versatile transcriptional responses on different hosts.
Journal ArticleDOI
Scipio: Using protein sequences to determine the precise exon/intron structures of genes and their orthologs in closely related species
TL;DR: Scipio is able to precisely map a protein query onto a genome and provides the user with the correct determination of intron-exon borders and splice sites, showing an improved prediction accuracy compared to BLAT and Exonerate.
Journal ArticleDOI
Six Subgroups and Extensive Recent Duplications Characterize the Evolution of the Eukaryotic Tubulin Protein Family
Peggy Findeisen,Stefanie Mühlhausen,Silke Dempewolf,Jonny Hertzog,Alexander Zietlow,Teresa Carlomagno,Martin Kollmar +6 more
TL;DR: Tubulins cannot be used for constructing species phylogenies without resolving their ortholog–paralog relationships, and the many gene duplicates and also the independent loss of the δ-, ε-, or ζ-tubulins suggest that tubulins can functionally substitute each other.