M
Matthew Boitano
Researcher at Pacific Biosciences
Publications - 29
Citations - 4248
Matthew Boitano is an academic researcher from Pacific Biosciences. The author has contributed to research in topics: Genome & Gene. The author has an hindex of 20, co-authored 29 publications receiving 3419 citations. Previous affiliations of Matthew Boitano include New England Biolabs.
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Journal ArticleDOI
Resolving the complexity of the human genome using single-molecule sequencing
Mark Chaisson,John Huddleston,Megan Y. Dennis,Peter H. Sudmant,Maika Malig,Fereydoun Hormozdiari,Francesca Antonacci,Urvashi Surti,Richard Sandstrom,Matthew Boitano,Jane M. Landolin,John A. Stamatoyannopoulos,Michael W. Hunkapiller,Jonas Korlach,Evan E. Eichler +14 more
TL;DR: A greater complexity of the human genome in the form of variation of longer and more complex repetitive DNA that can now be largely resolved with the application of this longer-read sequencing technology is suggested.
Journal ArticleDOI
Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly
Valerie A. Schneider,Tina A. Graves-Lindsay,Kerstin Howe,Nathan Bouk,Hsiu-Chuan Chen,Paul Kitts,Terence Murphy,Kim D. Pruitt,Françoise Thibaud-Nissen,Derek Albracht,Robert S. Fulton,Milinn Kremitzki,Vincent Magrini,Chris Markovic,Sean McGrath,Karyn Meltz Steinberg,Kate Auger,William Chow,Joanna Collins,Glenn Harden,Tim Hubbard,Sarah Pelan,Jared T. Simpson,Glen Threadgold,James Torrance,Jonathan Wood,Laura Clarke,Sergey Koren,Matthew Boitano,Paul Peluso,Heng Li,Chen-Shan Chin,Adam M. Phillippy,Richard Durbin,Richard K. Wilson,Paul Flicek,Evan E. Eichler,Deanna M. Church +37 more
TL;DR: It is asserted that the collected updates in GRCh38 make the newer assembly a more robust substrate for comprehensive analyses that will promote the understanding of human biology and advance the efforts to improve health.
Journal ArticleDOI
Discovery and genotyping of structural variation from long-read haploid genome sequence data
John Huddleston,Mark Chaisson,Karyn Meltz Steinberg,Wes Warren,Kendra Hoekzema,David Gordon,Tina A. Graves-Lindsay,Katherine M. Munson,Zev N. Kronenberg,Laura Vives,Paul Peluso,Matthew Boitano,Chen-Shin Chin,Jonas Korlach,Richard K. Wilson,Evan E. Eichler +15 more
TL;DR: Interestingly, when the authors repeat SV detection on a pseudodiploid genome constructed in silico by merging the two haploids, it is found that ∼59% of the heterozygous SVs are no longer detected by SMRT-SV, indicating that haploid resolution of long-read sequencing data will significantly increase sensitivity of SV detection.
Journal ArticleDOI
Single-molecule sequencing to track plasmid diversity of hospital-associated carbapenemase-producing Enterobacteriaceae.
Sean Conlan,Pamela J. Thomas,Clayton Deming,Morgan Park,Anna F. Lau,John P. Dekker,Evan S. Snitkin,Tyson A. Clark,Khai Luong,Yi Song,Yu-Chih Tsai,Matthew Boitano,Jyoti G. Dayal,Shelise Brooks,Brian L. Schmidt,Alice C. Young,James W. Thomas,Gerard G. Bouffard,Robert W. Blakesley,Nisc Comparative Sequencing Program,James C. Mullikin,Jonas Korlach,David K. Henderson,Karen M. Frank,Tara N. Palmore,Julia A. Segre +25 more
TL;DR: A new DNA sequencing method is used to take a close look at one way in which antibiotic resistance spreads, and finds evidence that plasmids carrying carbapenemase genes moved from one microbial species to another within the hospital environment.
Journal ArticleDOI
Characterization of DNA methyltransferase specificities using single-molecule, real-time DNA sequencing
Tyson A. Clark,Iain A. Murray,Richard D. Morgan,Andrey Kislyuk,Kristi E. Spittle,Matthew Boitano,Alexey Fomenkov,Richard J. Roberts,Jonas Korlach +8 more
TL;DR: SMRT sequencing confirms the identity and position of the methylated base in cases where the MTase specificity was previously established by other methods and finds evidence of unanticipated MTase promiscuity with some enzymes apparently also modifying sequences that are related, but not identical to the cognate site.