R
Richard D. Morgan
Researcher at New England Biolabs
Publications - 98
Citations - 3148
Richard D. Morgan is an academic researcher from New England Biolabs. The author has contributed to research in topics: Restriction enzyme & DNA. The author has an hindex of 25, co-authored 93 publications receiving 2785 citations. Previous affiliations of Richard D. Morgan include Hannover Medical School.
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Journal ArticleDOI
A nomenclature for restriction enzymes, DNA methyltransferases, homing endonucleases and their genes
Richard J. Roberts,Marlene Belfort,Timothy H. Bestor,Ashok S. Bhagwat,Thomas A. Bickle,Jurate Bitinaite,Robert Blumenthal,Sergey Kh. Degtyarev,David T. F. Dryden,Kevin Dybvig,Keith Firman,Elizaveta S. Gromova,Richard I. Gumport,Stephen E. Halford,Stanley Hattman,Joseph Heitman,David P. Hornby,Arvydas Janulaitis,Albert Jeltsch,Jytte Josephsen,Antal Kiss,Todd R. Klaenhammer,Ichizo Kobayashi,Huimin Kong,Detlev H. Krüger,Sanford A. Lacks,Martin G. Marinus,Michiko Miyahara,Richard D. Morgan,Noreen E. Murray,Valakunja Nagaraja,Andrzej Piekarowicz,Alfred Pingoud,Elisabeth A. Raleigh,Desirazu N. Rao,Norbert O. Reich,Repin Vladimir E,Eric U. Selker,Pang-Chui Shaw,Daniel C. Stein,Barry L. Stoddard,Waclaw Szybalski,Thomas A. Trautner,James L. Van Etten,Jorge M. B. Vítor,Geoffrey G. Wilson,Shuang Yong Xu +46 more
TL;DR: In this article, a nomenclature for restriction endonucleases, DNA methyltransferases, homing endon nucleases and related genes and gene products is described.
Journal ArticleDOI
The Epigenomic Landscape of Prokaryotes
Matthew J. Blow,Matthew J. Blow,Tyson A. Clark,Chris Daum,Chris Daum,Adam M. Deutschbauer,Alexey Fomenkov,Roxanne Fries,Roxanne Fries,Jeff Froula,Jeff Froula,Dongwan D. Kang,Dongwan D. Kang,Rex R. Malmstrom,Rex R. Malmstrom,Richard D. Morgan,Janos Posfai,Kanwar Singh,Kanwar Singh,Axel Visel,Axel Visel,Kelly M. Wetmore,Zhiying Zhao,Zhiying Zhao,Edward M. Rubin,Edward M. Rubin,Jonas Korlach,Len A. Pennacchio,Len A. Pennacchio,Richard J. Roberts +29 more
TL;DR: The results reveal the pervasive presence ofDNA methylation throughout the prokaryotic kingdoms, as well as the diversity of sequence specificities and potential functions of DNA methylation systems.
Journal ArticleDOI
Characterization of DNA methyltransferase specificities using single-molecule, real-time DNA sequencing
Tyson A. Clark,Iain A. Murray,Richard D. Morgan,Andrey Kislyuk,Kristi E. Spittle,Matthew Boitano,Alexey Fomenkov,Richard J. Roberts,Jonas Korlach +8 more
TL;DR: SMRT sequencing confirms the identity and position of the methylated base in cases where the MTase specificity was previously established by other methods and finds evidence of unanticipated MTase promiscuity with some enzymes apparently also modifying sequences that are related, but not identical to the cognate site.
Journal ArticleDOI
The methylomes of six bacteria
Iain A. Murray,Tyson A. Clark,Richard D. Morgan,Matthew Boitano,Brian P. Anton,Khai Luong,Alexey Fomenkov,Stephen Turner,Jonas Korlach,Richard J. Roberts +9 more
TL;DR: This study shows that the addition of SMRT sequencing to traditional sequencing approaches gives a wealth of useful functional information about a genome showing not only which MTase genes are active but also revealing their recognition sequences.
Journal ArticleDOI
The COMBREX Project: Design, Methodology, and Initial Results
Brian P. Anton,Yi Chien Chang,Peter Brown,Han-Pil Choi,Lina L. Faller,Jyotsna Guleria,Zhenjun Hu,Niels Klitgord,Ami Levy-Moonshine,Almaz Maksad,Varun Mazumdar,Mark G. McGettrick,Lais Osmani,Revonda M. Pokrzywa,John Rachlin,Rajeswari Swaminathan,Benjamin L. Allen,Benjamin L. Allen,Genevieve Housman,Caitlin Monahan,Krista Rochussen,Kevin R. Tao,Ashok S. Bhagwat,Steven E. Brenner,Linda Columbus,Valérie de Crécy-Lagard,Donald J. Ferguson,Alexey Fomenkov,Giovanni Gadda,Richard D. Morgan,Andrei L. Osterman,Dmitry A. Rodionov,Irina A. Rodionova,Kenneth E. Rudd,Dieter Söll,Jim C. Spain,Shuang-yong Xu,Alex Bateman,Robert Blumenthal,J. Martin Bollinger,Woo Suk Chang,Manuel Ferrer,Iddo Friedberg,Michael Y. Galperin,Julien Gobeill,Julien Gobeill,Daniel H. Haft,John F. Hunt,Peter D. Karp,William Klimke,Carsten Krebs,Dana Macelis,Ramana Madupu,Maria Jesus Martin,Jeffrey H Miller,Claire O'Donovan,Bernhard O. Palsson,Patrick Ruch,Patrick Ruch,Aaron T. Setterdahl,Granger G. Sutton,John Tate,Alexander F. Yakunin,Dmitri Tchigvintsev,Germán Plata,Jie Hu,Russell Greiner,David Horn,Kimmen Sjölander,Steven L. Salzberg,Dennis Vitkup,Stanley Letovsky,Daniel Segrè,Charles DeLisi,Richard J. Roberts,Richard J. Roberts,Martin Steffen,Simon Kasif +77 more
TL;DR: This community page discusses the progress made by the COMBREX project to address this important issue using both computational and experimental resources.