G
Glen Threadgold
Researcher at Wellcome Trust Sanger Institute
Publications - 12
Citations - 6235
Glen Threadgold is an academic researcher from Wellcome Trust Sanger Institute. The author has contributed to research in topics: Reference genome & Genome. The author has an hindex of 9, co-authored 11 publications receiving 4130 citations.
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Journal ArticleDOI
The zebrafish reference genome sequence and its relationship to the human genome.
Kerstin Howe,Matthew D. Clark,Carlos Torroja,Carlos Torroja,James Torrance,Camille Berthelot,Matthieu Muffato,John E. Collins,Sean Humphray,Karen McLaren,Lucy Matthews,Stuart McLaren,Ian M Sealy,Mario Caccamo,Carol Churcher,Carol Scott,Jeffrey C. Barrett,Romke Koch,Gerd Jörg Rauch,Simon D. M. White,William Chow,Britt Kilian,Leonor T. Quintais,José Afonso Guerra-Assunção,Yi Zhou,Yong Gu,Jennifer Yen,Jan Hinnerk Vogel,Tina Eyre,Seth Redmond,Ruby Banerjee,Jianxiang Chi,Beiyuan Fu,Elizabeth Langley,Sean Maguire,Gavin K. Laird,D. M. Lloyd,Emma J. Kenyon,Sarah Donaldson,Harminder Sehra,Jeff Almeida-King,Jane E. Loveland,Stephen J. Trevanion,Matthew Jones,Michael A. Quail,Dave Willey,Adrienne Hunt,John Burton,Sarah Sims,Kirsten McLay,Bob Plumb,J. C. Davis,Chris Clee,Karen Oliver,Richard M. Clark,Clare Riddle,David Eliott,Glen Threadgold,Glenn Harden,Darren Ware,Beverly Mortimer,Giselle Kerry,Paul Heath,Benjamin Phillimore,Alan Tracey,N Corby,Matthew Dunn,Christopher M. Johnson,Jonathan Wood,Susan J. Clark,Sarah Pelan,Guy Griffiths,Michelle Smith,Rebecca Glithero,Philip Howden,Nick Barker,Christopher Stevens,Joanna Harley,Karen Holt,Georgios Panagiotidis,J Lovell,Helen Beasley,Carl Henderson,Daria Gordon,Katherine Auger,Debbie E. Wright,Joanna Collins,Claire Raisen,Lauren Dyer,Kenric Leung,Lauren Robertson,Kirsty Ambridge,Daniel Leongamornlert,Sarah McGuire,Ruth Gilderthorp,C Griffiths,Deepa Manthravadi,Sarah Nichol,Gary L A Barker,S. Whitehead,Michael Kay,Jacqueline Brown,Clare Murnane,Emma Gray,Matthew Humphries,N Sycamore,Darren Barker,David S. Saunders,J. M. Wallis,A K Babbage,S Hammond,M Mashreghi-Mohammadi,Lucy Barr,Sancha Martin,Paul Wray,Andrew D. Ellington,Nicholas Matthews,Matthew Ellwood,Rebecca Woodmansey,Graham Clark,James D. Cooper,A Tromans,Darren Grafham,C. D. Skuce,Richard Pandian,Robert Andrews,Elliot Harrison,A M Kimberley,J Garnett,Nigel Fosker,Rebekah Hall,P Garner,Daniel P. Kelly,Christine P. Bird,Sophie Palmer,Ines Gehring,Andrea Berger,Christopher M. Dooley,Christopher M. Dooley,Zübeyde Ersan-Ürün,Cigdem Eser,Horst Geiger,Maria Geisler,Lena Karotki,Anette Kirn,Judith Konantz,Martina Konantz,Martina Oberländer,Silke Rudolph-Geiger,Mathias Teucke,Kazutoyo Osoegawa,Baoli Zhu,Amanda Rapp,Sara Widaa,Cordelia Langford,Fengtang Yang,Nigel P. Carter,Jennifer Harrow,Zemin Ning,Javier Herrero,Steve Searle,Anton J. Enright,Robert Geisler,Robert Geisler,Ronald H.A. Plasterk,Charles Lee,Monte Westerfield,Pieter J. de Jong,Leonard I. Zon,John H. Postlethwait,Christiane Nüsslein-Volhard,Tim Hubbard,Hugues Roest Crollius,Jane Rogers,Derek L. Stemple +174 more
TL;DR: A high-quality sequence assembly of the zebrafish genome is generated, made up of an overlapping set of completely sequenced large-insert clones that were ordered and oriented using a high-resolution high-density meiotic map, providing a clearer understanding of key genomic features such as a unique repeat content, a scarcity of pseudogenes, an enrichment of zebra fish-specific genes on chromosome 4 and chromosomal regions that influence sex determination.
Journal Article
Ensembl 2021
Kevin L. Howe,P. Achuthan,Jamie Allen,Jorge Alvarez-Jarreta,M. R. Amode,Irina M. Armean,A. G. Azov,Ruth Bennett,Jyothish Bhai,Konstantinos Billis,Sanjay Boddu,M. Charkhchi,Carla Cummins,L. Da Rin Fioretto,Claire Davidson,K. Dodiya,B. El Houdaigui,R. Fatima,Astrid Gall,C. Garcia Giron,Tiago Grego,C. Guijarro-Clarke,Leanne Haggerty,A. Hemrom,Thibaut Hourlier,Osagie G. Izuogu,Thomas Juettemann,V. Kaikala,M. Kay,Ilias Lavidas,T. Le,Diana Lemos,J. Gonzalez Martinez,J. C. Marugán,Thomas Maurel,Aoife McMahon,S. Mohanan,Benjamin Moore,Matthieu Muffato,D. N. Oheh,D. Paraschas,Anne Parker,Andrew Parton,I. Prosovetskaia,Manoj Pandian Sakthivel,A. I. A. Salam,Bianca M. Schmitt,Helen Schuilenburg,Dan Sheppard,E. Steed,Michal Szpak,M. Szuba,Kieron Taylor,Anja Thormann,Glen Threadgold,Brandon Walts,Andrea Winterbottom,Marc Chakiachvili,A. Chaubal,N. De Silva,B. Flint,Adam Frankish,Sarah E. Hunt,Gr, I. Isley, Langridge, N.,Jane E. Loveland,Fergal J. Martin,Jonathan M. Mudge,Joannella Morales,Emily Perry,Magali Ruffier,John Tate,David Thybert,Stephen J. Trevanion,Fiona Cunningham,Andrew D. Yates,Daniel R. Zerbino,Paul Flicek +76 more
TL;DR: Recent Ensembl developments are presented including two new website portals, which are designed to provide core tools and services for genomes as soon as possible and has been deployed to support large biodiversity sequencing projects.
Journal ArticleDOI
Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly
Valerie A. Schneider,Tina A. Graves-Lindsay,Kerstin Howe,Nathan Bouk,Hsiu-Chuan Chen,Paul Kitts,Terence Murphy,Kim D. Pruitt,Françoise Thibaud-Nissen,Derek Albracht,Robert S. Fulton,Milinn Kremitzki,Vincent Magrini,Chris Markovic,Sean McGrath,Karyn Meltz Steinberg,Kate Auger,William Chow,Joanna Collins,Glenn Harden,Tim Hubbard,Sarah Pelan,Jared T. Simpson,Glen Threadgold,James Torrance,Jonathan Wood,Laura Clarke,Sergey Koren,Matthew Boitano,Paul Peluso,Heng Li,Chen-Shan Chin,Adam M. Phillippy,Richard Durbin,Richard K. Wilson,Paul Flicek,Evan E. Eichler,Deanna M. Church +37 more
TL;DR: It is asserted that the collected updates in GRCh38 make the newer assembly a more robust substrate for comprehensive analyses that will promote the understanding of human biology and advance the efforts to improve health.
Journal ArticleDOI
Modernizing Reference Genome Assemblies
Deanna M. Church,Valerie A. Schneider,Tina Graves,Katherine Auger,Fiona Cunningham,Nathan Bouk,Hsiu Chuan Chen,Richa Agarwala,William M. McLaren,Graham R. S. Ritchie,Derek Albracht,Milinn Kremitzki,Susan M. Rock,Holland Kotkiewicz,Colin Kremitzki,Aye Wollam,Lee Trani,Lucinda Fulton,Robert S. Fulton,Lucy Matthews,S. Whitehead,William Chow,James Torrance,Matthew Dunn,Glenn Harden,Glen Threadgold,Jonathan Wood,Joanna Collins,Paul Heath,Guy Griffiths,Sarah Pelan,Darren Grafham,Evan E. Eichler,Evan E. Eichler,George M. Weinstock,Elaine R. Mardis,Richard K. Wilson,Kerstin Howe,Paul Flicek,Tim Hubbard +39 more
TL;DR: Support for this work came from the Intramural Research Program of the NIH, The National Library of Medicine, the European Molecular Biology Laboratory, the Wellcome Trust, and the Howard Hughes Medical Institute.
Journal ArticleDOI
A physical map of the mouse genome.
Simon G. Gregory,Mandeep Sekhon,Jacqueline E. Schein,Shaying Zhao,Kazutoyo Osoegawa,Carol Scott,R Evans,Paul W. Burridge,Tony Cox,Christopher A Fox,Richard D. Hutton,Ian R Mullenger,Kimbly J Phillips,James Smith,Jim Stalker,Glen Threadgold,Ewan Birney,Kristine M. Wylie,Asif T. Chinwalla,John W. Wallis,LaDeana W. Hillier,Jason Carter,Tony Gaige,Sara Jaeger,Colin Kremitzki,Dan Layman,Jason Maas,Rebecca McGrane,Kelly Mead,Rebecca S. Walker,Steven J.M. Jones,Michael Smith,Jennifer Asano,Ian Bosdet,Susanna Chan,Suganthi Chittaranjan,Readman Chiu,Chris Fjell,Dan Fuhrmann,Noreen Girn,Catharine Gray,Ran Guin,Letticia Hsiao,Martin Krzywinski,Reta Kutsche,Soo Sen Lee,Carrie Mathewson,Candice McLeavy,Steve Messervier,Steven R. Ness,Pawan Pandoh,Anna-Liisa Prabhu,Parvaneh Saeedi,Duane E Smailus,Lorraine Spence,Jeffrey L Stott,Sheryl Taylor,Wesley Terpstra,Miranda Tsai,Jill Vardy,Natasja Wye,George S. Yang,Sofiya Shatsman,Bola Ayodeji,Keita Geer,Getahun Tsegaye,Alla Shvartsbeyn,Elizabeth Gebregeorgis,Margaret Krol,Daniel A. Russell,Larry Overton,Joel A. Malek,Michael C. Holmes,Michael Heaney,Jyoti Shetty,Tamara Feldblyum,William C. Nierman,Joseph J. Catanese,Tim Hubbard,Robert H. Waterston,Jane Rogers,Pieter J. de Jong,Claire M. Fraser,Marco A. Marra,John Douglas Mcpherson,David R. Bentley +85 more
TL;DR: A physical map of the mouse genome that contains 296 contigs of overlapping bacterial clones and 16,992 unique markers is constructed, enabling identification of a mouse clone that corresponds to almost any position in the human genome.