M
Matti Javanainen
Researcher at Academy of Sciences of the Czech Republic
Publications - 67
Citations - 3093
Matti Javanainen is an academic researcher from Academy of Sciences of the Czech Republic. The author has contributed to research in topics: Lipid bilayer & Membrane. The author has an hindex of 24, co-authored 56 publications receiving 2123 citations. Previous affiliations of Matti Javanainen include University of Helsinki & Tampere University of Technology.
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Journal ArticleDOI
Martini 3 : A general purpose force field for coarse-grained molecular dynamics
Paulo C. T. Souza,Paulo C. T. Souza,Riccardo Alessandri,Jonathan Barnoud,Jonathan Barnoud,Sebastian Thallmair,Sebastian Thallmair,Ignacio Faustino,Fabian Grünewald,Ilias Patmanidis,Haleh Abdizadeh,Bart M H Bruininks,Tsjerk A. Wassenaar,Peter C. Kroon,Josef Melcr,Vincent Nieto,Valentina Corradi,Hanif M. Khan,Hanif M. Khan,Jan Domański,Jan Domański,Matti Javanainen,Hector Martinez-Seara,Nathalie Reuter,Robert B. Best,Ilpo Vattulainen,Luca Monticelli,Xavier Periole,D. Peter Tieleman,Alex H. de Vries,Siewert J. Marrink +30 more
TL;DR: The coarse-grained Martini force field is widely used in biomolecular simulations as discussed by the authors, which allows accurate predictions of molecular packing and interactions in general, exemplified with a vast and diverse set of applications, ranging from oil/water partitioning and miscibility data to complex molecular systems, involving protein-protein and protein-lipid interactions and material science applications as ionic liquids and aedamers.
Journal ArticleDOI
Anomalous diffusion of phospholipids and cholesterols in a lipid bilayer and its origins.
TL;DR: It is demonstrated that fractional Langevin equation motion universally describes the lipid motion in all phases, including the gel phase, and in the presence of cholesterol.
Journal ArticleDOI
Protein Crowding in Lipid Bilayers Gives Rise to Non-Gaussian Anomalous Lateral Diffusion of Phospholipids and Proteins
Jae-Hyung Jeon,Jae-Hyung Jeon,Matti Javanainen,Matti Javanainen,Hector Martinez-Seara,Hector Martinez-Seara,Ralf Metzler,Ralf Metzler,Ilpo Vattulainen,Ilpo Vattulainen,Ilpo Vattulainen +10 more
TL;DR: In this paper, an investigation into how lipids diffuse in the presence of varying protein:lipid number ratios reveals that protein crowding results in drastically different lipid and protein diffusion due to the strengthened impact of correlated motion.
Journal ArticleDOI
Multiscale Simulations of Biological Membranes: The Challenge To Understand Biological Phenomena in a Living Substance.
TL;DR: This review discusses the current state-of-the-art of biomembrane simulations that, until now, have largely focused on a rather narrow picture of the complexity of the membranes, and discusses the challenges that should unravel in the foreseeable future.
Journal ArticleDOI
Anomalous and normal diffusion of proteins and lipids in crowded lipid membranes
Matti Javanainen,Henrik Hammaren,Luca Monticelli,Jae-Hyung Jeon,Markus S. Miettinen,Hector Martinez-Seara,Ralf Metzler,Ralf Metzler,Ilpo Vattulainen,Ilpo Vattulainen +9 more
TL;DR: It is found that both packing and protein crowding have a profound effect on lateral diffusion, slowing it down and suggesting that protein concentration is anything but constant in the plane of cell membranes.