R
Radka Svobodová Vařeková
Researcher at Central European Institute of Technology
Publications - 8
Citations - 914
Radka Svobodová Vařeková is an academic researcher from Central European Institute of Technology. The author has contributed to research in topics: Protein Data Bank & PDBsum. The author has an hindex of 7, co-authored 8 publications receiving 497 citations. Previous affiliations of Radka Svobodová Vařeková include Masaryk University.
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PDBsum: Structural summaries of PDB entries
TL;DR: PDBsum is a web server providing structural information on the entries in the Protein Data Bank, primarily image‐based and include protein secondary structure, protein‐ligand and protein‐DNA interactions, PROCHECK analyses of structural quality, and many others.
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Validation of ligands in macromolecular structures determined by X-ray crystallography
Oliver S. Smart,Vladimír Horský,Swanand Gore,Radka Svobodová Vařeková,Veronika Bendová,Gerard J. Kleywegt,Sameer Velankar +6 more
TL;DR: Better metrics are required to be able to assess small-molecule ligands in macromolecular structures in Worldwide Protein Data Bank validation reports, including ligand electron-density fit outliers.
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Molecular evolution and diversification of the SMXL gene family.
Taraka Ramji Moturu,Sravankumar Thula,Ravi Kumar Singh,Tomasz Nodzyński,Radka Svobodová Vařeková,Radka Svobodová Vařeková,Jiří Friml,Sibu Simon +7 more
TL;DR: The results suggest that a gradual co-evolution of SMXL members with their upstream receptors D14/KAI2 provided an increased specificity to both the SL perception and response in land plants.
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The bio.tools registry of software tools and data resources for the life sciences.
Jon Ison,Hans Ienasescu,Piotr Jaroslaw Chmura,Emil Karol Rydza,Hervé Ménager,Matúš Kalaš,Veit Schwämmle,Björn Grüning,Niall Beard,Rodrigo Lopez,Séverine Duvaud,Heinz Stockinger,Bengt Persson,Radka Svobodová Vařeková,Tomáš Raček,Jiří Vondrášek,Hedi Peterson,Ahto Salumets,Inge Jonassen,Rob Hooft,Tommi Nyrönen,Alfonso Valencia,Salvador Capella,Josep Lluís Gelpí,Federico Zambelli,Federico Zambelli,Babis Savakis,Brane Leskošek,Kristoffer Rapacki,Christophe Blanchet,Rafael C. Jimenez,Arlindo L. Oliveira,Gert Vriend,Olivier Collin,Jacques van Helden,Peter Løngreen,Søren Brunak,Søren Brunak +37 more
TL;DR: A pan-European enterprise is outlined to provide a catalogue of tools and databases that can be used in workflows for the flexible utilization of the many life science tools that are needed to optimally convert data into knowledge.
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ChannelsDB: database of biomacromolecular tunnels and pores
Lukáš Pravda,David Sehnal,Radka Svobodová Vařeková,Veronika Navrátilová,Dominik Toušek,Karel Berka,Michal Otyepka,Jaroslav Koča +7 more
TL;DR: The database stores information about geometrical features and physicochemical properties involving polarity, hydrophobicity, hydropathy, charge and mutability and provides an invaluable resource for research related to deciphering the biological function of biomacromolecular channels.