R
Rajandeep S. Sekhon
Researcher at Clemson University
Publications - 42
Citations - 3387
Rajandeep S. Sekhon is an academic researcher from Clemson University. The author has contributed to research in topics: Gene & Allele. The author has an hindex of 21, co-authored 38 publications receiving 2881 citations. Previous affiliations of Rajandeep S. Sekhon include Great Lakes Bioenergy Research Center & Pennsylvania State University.
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Journal ArticleDOI
Maize HapMap2 identifies extant variation from a genome in flux
Jer Ming Chia,Chi Song,Peter J. Bradbury,Peter J. Bradbury,Denise E. Costich,Denise E. Costich,Natalia de Leon,Natalia de Leon,John Doebley,Robert J. Elshire,Brandon S. Gaut,Laura Geller,Jeffrey C. Glaubitz,Michael A. Gore,Kate E. Guill,Kate E. Guill,James B. Holland,James B. Holland,Matthew B. Hufford,Jinsheng Lai,Meng Li,Xin Liu,Yanli Lu,Richard W. McCombie,Rebecca Nelson,Jesse Poland,Jesse Poland,Boddupalli M. Prasanna,Tanja Pyhäjärvi,Tingzhao Rong,Rajandeep S. Sekhon,Rajandeep S. Sekhon,Qi Sun,Maud I. Tenaillon,Maud I. Tenaillon,Feng Tian,Jun Wang,Xun Xu,Zhiwu Zhang,Shawn M. Kaeppler,Shawn M. Kaeppler,Jeffrey Ross-Ibarra,Michael D. McMullen,Michael D. McMullen,Edward S. Buckler,Edward S. Buckler,Gengyun Zhang,Yunbi Xu,Doreen Ware,Doreen Ware +49 more
TL;DR: It is found that structural variations are pervasive in the Z. mays genome and are enriched at loci associated with important traits and the larger Tripsacum genome can be explained by transposable element abundance rather than an allopolyploid origin.
Journal ArticleDOI
Genome‐wide atlas of transcription during maize development
Rajandeep S. Sekhon,Haining Lin,Kevin L. Childs,Kevin L. Childs,Candice N. Hansey,C. Robin Buell,C. Robin Buell,Natalia de Leon,Shawn M. Kaeppler +8 more
TL;DR: A comprehensive atlas of global transcription profiles across developmental stages and plant organs is presented, and it is found that expansion of distinct gene families was accompanied by divergent, tissue-specific transcription patterns of the paralogs.
Journal ArticleDOI
Insights into the Maize Pan-Genome and Pan-Transcriptome
Candice N. Hirsch,Candice N. Hirsch,Jillian M. Foerster,James M. Johnson,Rajandeep S. Sekhon,Rajandeep S. Sekhon,German Muttoni,Brieanne Vaillancourt,Brieanne Vaillancourt,Francisco Peñagaricano,Erika Lindquist,Mary Ann Pedraza,Kerrie Barry,Natalia de Leon,Natalia de Leon,Shawn M. Kaeppler,Shawn M. Kaeppler,C. Robin Buell,C. Robin Buell +18 more
TL;DR: The dynamic nature of the maize pan-genome was revealed and it was demonstrated that a substantial portion of variation may lie outside the single reference genome for a species.
Journal ArticleDOI
An Expanded Maize Gene Expression Atlas based on RNA Sequencing and its Use to Explore Root Development
Scott C. Stelpflug,Rajandeep S. Sekhon,Brieanne Vaillancourt,Candice N. Hirsch,C. Robin Buell,Natalia de Leon,Shawn M. Kaeppler +6 more
TL;DR: This comprehensive transcriptome dataset is a powerful tool toward understanding maize development, physiology, and phenotypic diversity.
Journal ArticleDOI
Marker Density and Read Depth for Genotyping Populations Using Genotyping-by-Sequencing
Timothy M. Beissinger,Candice N. Hirsch,Candice N. Hirsch,Rajandeep S. Sekhon,Rajandeep S. Sekhon,Jillian M. Foerster,James M. Johnson,German Muttoni,Brieanne Vaillancourt,C. Robin Buell,C. Robin Buell,Shawn M. Kaeppler,Shawn M. Kaeppler,Natalia de Leon,Natalia de Leon +14 more
TL;DR: The methods described in this article facilitate determination of sequencing depth in the context of empirically defined read depth to achieve desired marker density for genetic mapping studies.