R
Rie Shimizu-Inatsugi
Researcher at University of Zurich
Publications - 44
Citations - 1737
Rie Shimizu-Inatsugi is an academic researcher from University of Zurich. The author has contributed to research in topics: Cardamine & Genome. The author has an hindex of 18, co-authored 40 publications receiving 1170 citations. Previous affiliations of Rie Shimizu-Inatsugi include National Institute of Advanced Industrial Science and Technology & Tokyo Institute of Technology.
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Journal ArticleDOI
Multiple wheat genomes reveal global variation in modern breeding.
Sean Walkowiak,Sean Walkowiak,Liangliang Gao,Cécile Monat,Georg Haberer,Mulualem T. Kassa,Jemima Brinton,Ricardo H. Ramirez-Gonzalez,Markus C. Kolodziej,Emily Delorean,Dinushika Thambugala,Valentyna Klymiuk,Brook Byrns,Heidrun Gundlach,Venkat Bandi,Jorge Nunez Siri,Kirby T. Nilsen,Catharine Aquino,Axel Himmelbach,Dario Copetti,Dario Copetti,Tomohiro Ban,Luca Venturini,Michael W. Bevan,Bernardo J. Clavijo,Dal-Hoe Koo,Jennifer Ens,Krystalee Wiebe,Amidou N’Diaye,Allen K. Fritz,Carl Gutwin,Anne Fiebig,Christine Fosker,Bin Xiao Fu,Gonzalo Garcia Accinelli,Keith A. Gardner,Nick Fradgley,Juan J. Gutierrez-Gonzalez,Gwyneth Halstead-Nussloch,Masaomi Hatakeyama,Chu Shin Koh,Jasline Deek,Alejandro C. Costamagna,Pierre R. Fobert,Darren Heavens,Hiroyuki Kanamori,Kanako Kawaura,Fuminori Kobayashi,Ksenia V. Krasileva,Tony Kuo,Tony Kuo,Neil McKenzie,Kazuki Murata,Yusuke Nabeka,Timothy Paape,Sudharsan Padmarasu,Lawrence Percival-Alwyn,Sateesh Kagale,Uwe Scholz,Jun Sese,Philomin Juliana,Ravi P. Singh,Rie Shimizu-Inatsugi,David Swarbreck,James Cockram,Hikmet Budak,Toshiaki Tameshige,Tsuyoshi Tanaka,Hiroyuki Tsuji,Jonathan M. Wright,Jianzhong Wu,Burkhard Steuernagel,Ian Small,Sylvie Cloutier,Gabriel Keeble-Gagnère,Gary J. Muehlbauer,Josquin Tibbets,Shuhei Nasuda,Joanna Melonek,Pierre Hucl,Andrew G. Sharpe,Matthew D. Clark,Erik Legg,Arvind K. Bharti,Peter Langridge,Anthony Hall,Cristobal Uauy,Martin Mascher,Simon G. Krattinger,Simon G. Krattinger,Hirokazu Handa,Kentaro Shimizu,Kentaro Shimizu,Assaf Distelfeld,Kenneth J. Chalmers,Beat Keller,Klaus F. X. Mayer,Jesse Poland,Nils Stein,Nils Stein,Curt A. McCartney,Manuel Spannagl,Thomas Wicker,Curtis J. Pozniak +103 more
TL;DR: Comparative analysis of multiple genome assemblies from wheat reveals extensive diversity that results from the complex breeding history of wheat and provides a basis for further potential improvements to this important food crop.
Journal ArticleDOI
Evolution of self-compatibility in Arabidopsis by a mutation in the male specificity gene
Takashi Tsuchimatsu,Keita Suwabe,Keita Suwabe,Rie Shimizu-Inatsugi,Sachiyo Isokawa,Pavlos Pavlidis,Thomas Städler,Go Suzuki,Seiji Takayama,Masao Watanabe,Kentaro Shimizu +10 more
TL;DR: A disruptive 213-base-pair inversion in the SCR gene is found in 95% of European accessions, which contrasts with the genome-wide pattern of polymorphism in European A. thaliana.
Journal ArticleDOI
The allopolyploid Arabidopsis kamchatica originated from multiple individuals of Arabidopsis lyrata and Arabidopsis halleri
Rie Shimizu-Inatsugi,Judita Lihová,Hiroko Iwanaga,Hiroko Iwanaga,Hiroko Iwanaga,Hiroshi Kudoh,Hiroshi Kudoh,Karol Marhold,Karol Marhold,Outi Savolainen,Kuniaki Watanabe,Kuniaki Watanabe,Valentin Yakubov,Kentaro Shimizu +13 more
TL;DR: The findings suggest that self‐compatibility and gene silencing occurred independently in different origins of Arabidopsis kamchatica, and the haplotypes of low‐copy nuclear genes in Japan suggest independent polyploidization events rather than introgression.
Journal ArticleDOI
Genome-wide quantification of homeolog expression ratio revealed nonstochastic gene regulation in synthetic allopolyploid Arabidopsis
TL;DR: It is found that the ratios of homeologs before and after cold stress treatment were highly correlated, highlighting the presence of nonstochastic polyploid gene regulation despite previous research identifying stochastic variation in expression.
Journal ArticleDOI
Genome assembly and annotation of Arabidopsis halleri, a model for heavy metal hyperaccumulation and evolutionary ecology
Roman Briskine,Timothy Paape,Rie Shimizu-Inatsugi,Tomoaki Nishiyama,Satoru Akama,Jun Sese,Kentaro Shimizu,Kentaro Shimizu +7 more
TL;DR: The genome assembly of the self‐incompatible species Arabidopsis halleri was improved by using long‐insert mate‐pair libraries to improve the assembly quality and synteny of A. halleri ssp.