C
Cécile Monat
Researcher at Leibniz Association
Publications - 17
Citations - 1126
Cécile Monat is an academic researcher from Leibniz Association. The author has contributed to research in topics: Genome & Genomics. The author has an hindex of 10, co-authored 17 publications receiving 486 citations. Previous affiliations of Cécile Monat include Rice University & University of Montpellier.
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Journal ArticleDOI
Multiple wheat genomes reveal global variation in modern breeding.
Sean Walkowiak,Sean Walkowiak,Liangliang Gao,Cécile Monat,Georg Haberer,Mulualem T. Kassa,Jemima Brinton,Ricardo H. Ramirez-Gonzalez,Markus C. Kolodziej,Emily Delorean,Dinushika Thambugala,Valentyna Klymiuk,Brook Byrns,Heidrun Gundlach,Venkat Bandi,Jorge Nunez Siri,Kirby T. Nilsen,Catharine Aquino,Axel Himmelbach,Dario Copetti,Dario Copetti,Tomohiro Ban,Luca Venturini,Michael W. Bevan,Bernardo J. Clavijo,Dal-Hoe Koo,Jennifer Ens,Krystalee Wiebe,Amidou N’Diaye,Allen K. Fritz,Carl Gutwin,Anne Fiebig,Christine Fosker,Bin Xiao Fu,Gonzalo Garcia Accinelli,Keith A. Gardner,Nick Fradgley,Juan J. Gutierrez-Gonzalez,Gwyneth Halstead-Nussloch,Masaomi Hatakeyama,Chu Shin Koh,Jasline Deek,Alejandro C. Costamagna,Pierre R. Fobert,Darren Heavens,Hiroyuki Kanamori,Kanako Kawaura,Fuminori Kobayashi,Ksenia V. Krasileva,Tony Kuo,Tony Kuo,Neil McKenzie,Kazuki Murata,Yusuke Nabeka,Timothy Paape,Sudharsan Padmarasu,Lawrence Percival-Alwyn,Sateesh Kagale,Uwe Scholz,Jun Sese,Philomin Juliana,Ravi P. Singh,Rie Shimizu-Inatsugi,David Swarbreck,James Cockram,Hikmet Budak,Toshiaki Tameshige,Tsuyoshi Tanaka,Hiroyuki Tsuji,Jonathan M. Wright,Jianzhong Wu,Burkhard Steuernagel,Ian Small,Sylvie Cloutier,Gabriel Keeble-Gagnère,Gary J. Muehlbauer,Josquin Tibbets,Shuhei Nasuda,Joanna Melonek,Pierre Hucl,Andrew G. Sharpe,Matthew D. Clark,Erik Legg,Arvind K. Bharti,Peter Langridge,Anthony Hall,Cristobal Uauy,Martin Mascher,Simon G. Krattinger,Simon G. Krattinger,Hirokazu Handa,Kentaro Shimizu,Kentaro Shimizu,Assaf Distelfeld,Kenneth J. Chalmers,Beat Keller,Klaus F. X. Mayer,Jesse Poland,Nils Stein,Nils Stein,Curt A. McCartney,Manuel Spannagl,Thomas Wicker,Curtis J. Pozniak +103 more
TL;DR: Comparative analysis of multiple genome assemblies from wheat reveals extensive diversity that results from the complex breeding history of wheat and provides a basis for further potential improvements to this important food crop.
Journal ArticleDOI
The barley pan-genome reveals the hidden legacy of mutation breeding.
Murukarthick Jayakodi,Sudharsan Padmarasu,Georg Haberer,Venkata Suresh Bonthala,Heidrun Gundlach,Cécile Monat,Thomas Lux,Nadia Kamal,Daniel Lang,Axel Himmelbach,Jennifer Ens,Xiao-Qi Zhang,Tefera Tolera Angessa,Gaofeng Zhou,Gaofeng Zhou,Cong Tan,Camilla Beate Hill,Penghao Wang,Miriam Schreiber,Lori Beth Boston,Christopher Plott,Jerry Jenkins,Yu Guo,Anne Fiebig,Hikmet Budak,Dongdong Xu,Jing Zhang,Chunchao Wang,Jane Grimwood,Jeremy Schmutz,Ganggang Guo,Guoping Zhang,Keiichi Mochida,Keiichi Mochida,Takashi Hirayama,Kazuhiro Sato,Kenneth J. Chalmers,Peter Langridge,Robbie Waugh,Robbie Waugh,Robbie Waugh,Curtis J. Pozniak,Uwe Scholz,Klaus F. X. Mayer,Manuel Spannagl,Chengdao Li,Chengdao Li,Chengdao Li,Martin Mascher,Nils Stein,Nils Stein +50 more
TL;DR: This first-generation barley pan-genome makes previously hidden genetic variation accessible to genetic studies and breeding.
Journal ArticleDOI
TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools
Cécile Monat,Sudharsan Padmarasu,Thomas Lux,Thomas Wicker,Heidrun Gundlach,Axel Himmelbach,Jennifer Ens,Chengdao Li,Chengdao Li,Gary J. Muehlbauer,Alan H. Schulman,Robbie Waugh,Robbie Waugh,Ilka Braumann,Curtis J. Pozniak,Uwe Scholz,Klaus F. X. Mayer,Manuel Spannagl,Nils Stein,Nils Stein,Martin Mascher +20 more
TL;DR: TRITEX, an open-source computational workflow that combines paired-end, mate-pair, 10X Genomics linked-read with chromosome conformation capture sequencing data to construct sequence scaffolds with megabase-scale contiguity ordered into chromosomal pseudomolecules is presented.
Journal ArticleDOI
The Rise and Fall of African Rice Cultivation Revealed by Analysis of 246 New Genomes
Philippe Cubry,Christine Tranchant-Dubreuil,Anne-Céline Thuillet,Cécile Monat,Marie-Noelle Ndjiondjop,Karine Labadie,Corinne Cruaud,Corinne Cruaud,Stefan Engelen,Stefan Engelen,Nora Scarcelli,Bénédicte Rhoné,Concetta Burgarella,Christian Dupuy,Pierre Larmande,Patrick Wincker,Patrick Wincker,Olivier François,François Sabot,François Sabot,Yves Vigouroux,Yves Vigouroux +21 more
TL;DR: This paper inferred the cradle of African rice domestication to be in the Inner Niger Delta Domestication was preceded by a sharp decline of most wild populations that started more than 10,000 years ago The wild population collapse occurred during the drying of the Sahara.
Journal ArticleDOI
Prospects of pan-genomics in barley
TL;DR: The in silico representation of the barley pan-genome may inform about the mechanisms of structural genome evolution in the Triticeae and supplement quantitative genetics models of crop performance for better accuracy and predictive ability.