R
Ryan C. Kirkbride
Researcher at University of Texas at Austin
Publications - 14
Citations - 2918
Ryan C. Kirkbride is an academic researcher from University of Texas at Austin. The author has contributed to research in topics: Gene & Regulation of gene expression. The author has an hindex of 10, co-authored 13 publications receiving 2375 citations. Previous affiliations of Ryan C. Kirkbride include University of California, Davis.
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Journal ArticleDOI
Sequencing of allotetraploid cotton ( Gossypium hirsutum L. acc. TM-1) provides a resource for fiber improvement
Tianzhen Zhang,Yan Hu,Wenkai Jiang,Lei Fang,Xueying Guan,Jiedan Chen,Jinbo Zhang,Christopher A. Saski,Brian E. Scheffler,David M. Stelly,Amanda M. Hulse-Kemp,Qun Wan,Bingliang Liu,Chunxiao Liu,Sen Wang,Mengqiao Pan,Yangkun Wang,Dawei Wang,Wenxue Ye,Lijing Chang,Wenpan Zhang,Qingxin Song,Ryan C. Kirkbride,Xiao-Ya Chen,Elizabeth S. Dennis,Danny J. Llewellyn,Daniel G. Peterson,Peggy Thaxton,Don C. Jones,Qiong Wang,Xiaoyang Xu,Hua Zhang,Huaitong Wu,Lei Zhou,Gaofu Mei,Shuqi Chen,Yue Tian,Dan Xiang,Xinghe Li,Jian Ding,Qiyang Zuo,Linna Tao,Yunchao Liu,Ji Li,Yu Lin,Yuanyuan Hui,Zhisheng Cao,Caiping Cai,Xiefei Zhu,Zhi Jiang,Baoliang Zhou,Wangzhen Guo,Ruiqiang Li,Z. Jeffrey Chen +53 more
TL;DR: Genomic signatures of selection and domestication are associated with positively selected genes (PSGs) for fiber improvement in the A subgenome and for stress tolerance in the D subgenomes, suggesting asymmetric evolution.
Journal ArticleDOI
Global analysis of gene activity during Arabidopsis seed development and identification of seed-specific transcription factors.
Brandon H. Le,Chen Cheng,Anhthu Q. Bui,Javier A. Wagmaister,Kelli F. Henry,Julie M. Pelletier,Linda Kwong,Mark F. Belmonte,Ryan C. Kirkbride,Steve Horvath,Gary N. Drews,Robert L. Fischer,Jack K. Okamuro,John J. Harada,Robert B. Goldberg +14 more
TL;DR: In this paper, the authors used Affymetrix GeneChips to profile Arabidopsis genes active in seeds from fertilization through maturation and at other times of the plant life cycle.
Journal ArticleDOI
Comprehensive developmental profiles of gene activity in regions and subregions of the Arabidopsis seed
Mark F. Belmonte,Ryan C. Kirkbride,Sandra L. Stone,Julie M. Pelletier,Anhthu Q. Bui,Edward C. Yeung,Meryl Hashimoto,Jiong Fei,Corey M. Harada,Matthew D. Munoz,Brandon H. Le,Gary N. Drews,Siobhan M. Brady,Robert B. Goldberg,John J. Harada +14 more
TL;DR: This work profiled gene activity genome-wide in every organ, tissue, and cell type of Arabidopsis seeds from fertilization through maturity, offering the most comprehensive description of gene activity in seeds with high spatial and temporal resolution.
Journal ArticleDOI
Regulation of imprinted gene expression in Arabidopsis endosperm
Tzung-Fu Hsieh,Juhyun Shin,Rie Uzawa,Pedro Silva,Stephanie Cohen,Matthew J. Bauer,Meryl Hashimoto,Ryan C. Kirkbride,John J. Harada,Daniel Zilberman,Robert L. Fischer +10 more
TL;DR: The authors used extensive sequencing of cDNA libraries to identify 9 paternally and 34 maternally expressed imprinted genes in A. thaliana endosperm that are regulated by the DNA-demethylating glycosylase DEMETER, the DNA methyltransferase MET1, and/or the core Polycomb group protein FIE.
Journal ArticleDOI
Genomic diversifications of five Gossypium allopolyploid species and their impact on cotton improvement.
Z. Jeffrey Chen,Z. Jeffrey Chen,Avinash Sreedasyam,Atsumi Ando,Qingxin Song,Qingxin Song,Luis M De Santiago,Amanda M. Hulse-Kemp,Mingquan Ding,Wenxue Ye,Ryan C. Kirkbride,Jerry Jenkins,Christopher Plott,John T. Lovell,Yu-Ming Lin,Robert N. Vaughn,Bo Liu,Sheron Simpson,Brian E. Scheffler,Li Wen,Christopher A. Saski,Corrinne E. Grover,Guanjing Hu,Justin L. Conover,Joseph W. Carlson,Shengqiang Shu,Lori Beth Boston,Melissa Williams,Daniel G. Peterson,Keith McGee,Don C. Jones,Jonathan F. Wendel,David M. Stelly,Jane Grimwood,Jeremy Schmutz +34 more
TL;DR: Sequencing and genomic diversification of five allopolyploid cotton species provide insights into polyploid genome evolution and epigenetic landscapes for cotton improvement, and will empower efforts to manipulate genetic recombination and modify epigenetics landscapes and target genes for crop improvement.