A
Amanda M. Hulse-Kemp
Researcher at Agricultural Research Service
Publications - 43
Citations - 2135
Amanda M. Hulse-Kemp is an academic researcher from Agricultural Research Service. The author has contributed to research in topics: Biology & Medicine. The author has an hindex of 13, co-authored 27 publications receiving 1520 citations. Previous affiliations of Amanda M. Hulse-Kemp include Texas A&M University & United States Department of Agriculture.
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Journal ArticleDOI
Sequencing of allotetraploid cotton ( Gossypium hirsutum L. acc. TM-1) provides a resource for fiber improvement
Tianzhen Zhang,Yan Hu,Wenkai Jiang,Lei Fang,Xueying Guan,Jiedan Chen,Jinbo Zhang,Christopher A. Saski,Brian E. Scheffler,David M. Stelly,Amanda M. Hulse-Kemp,Qun Wan,Bingliang Liu,Chunxiao Liu,Sen Wang,Mengqiao Pan,Yangkun Wang,Dawei Wang,Wenxue Ye,Lijing Chang,Wenpan Zhang,Qingxin Song,Ryan C. Kirkbride,Xiao-Ya Chen,Elizabeth S. Dennis,Danny J. Llewellyn,Daniel G. Peterson,Peggy Thaxton,Don C. Jones,Qiong Wang,Xiaoyang Xu,Hua Zhang,Huaitong Wu,Lei Zhou,Gaofu Mei,Shuqi Chen,Yue Tian,Dan Xiang,Xinghe Li,Jian Ding,Qiyang Zuo,Linna Tao,Yunchao Liu,Ji Li,Yu Lin,Yuanyuan Hui,Zhisheng Cao,Caiping Cai,Xiefei Zhu,Zhi Jiang,Baoliang Zhou,Wangzhen Guo,Ruiqiang Li,Z. Jeffrey Chen +53 more
TL;DR: Genomic signatures of selection and domestication are associated with positively selected genes (PSGs) for fiber improvement in the A subgenome and for stress tolerance in the D subgenomes, suggesting asymmetric evolution.
Journal ArticleDOI
Genomic diversifications of five Gossypium allopolyploid species and their impact on cotton improvement.
Z. Jeffrey Chen,Z. Jeffrey Chen,Avinash Sreedasyam,Atsumi Ando,Qingxin Song,Qingxin Song,Luis M De Santiago,Amanda M. Hulse-Kemp,Mingquan Ding,Wenxue Ye,Ryan C. Kirkbride,Jerry Jenkins,Christopher Plott,John T. Lovell,Yu-Ming Lin,Robert N. Vaughn,Bo Liu,Sheron Simpson,Brian E. Scheffler,Li Wen,Christopher A. Saski,Corrinne E. Grover,Guanjing Hu,Justin L. Conover,Joseph W. Carlson,Shengqiang Shu,Lori Beth Boston,Melissa Williams,Daniel G. Peterson,Keith McGee,Don C. Jones,Jonathan F. Wendel,David M. Stelly,Jane Grimwood,Jeremy Schmutz +34 more
TL;DR: Sequencing and genomic diversification of five allopolyploid cotton species provide insights into polyploid genome evolution and epigenetic landscapes for cotton improvement, and will empower efforts to manipulate genetic recombination and modify epigenetics landscapes and target genes for crop improvement.
Journal ArticleDOI
Development of a 63K SNP Array for Cotton and High-Density Mapping of Intraspecific and Interspecific Populations of Gossypium spp.
Amanda M. Hulse-Kemp,Jana Lemm,Joerg Plieske,Hamid Ashrafi,Ramesh Buyyarapu,David D. Fang,James Frelichowski,Marc Giband,Steve Hague,Lori L. Hinze,Kelli J. Kochan,Penny K. Riggs,Jodi A. Scheffler,Joshua A. Udall,Mauricio Ulloa,Shirley S Wang,Qian-Hao Zhu,Sumit K. Bag,Archana Bhardwaj,John J. Burke,Robert L. Byers,Michel Claverie,Michael A. Gore,David B. Harker,S. Islam,Johnie N. Jenkins,Don C. Jones,Jean-Marc Lacape,Danny J. Llewellyn,Richard G. Percy,Alan E. Pepper,Jesse Poland,Krishan Mohan Rai,Samir V. Sawant,Sunil Kumar Singh,Andrew Spriggs,Jen Taylor,Fei Wang,Scott Yourstone,Xiuting Zheng,Cindy Lawley,Martin W. Ganal,Allen Van Deynze,Iain W. Wilson,David M. Stelly +44 more
TL;DR: The produced intraspecific genetic map is the first saturated map that associates into 26 linkage groups corresponding to the number of cotton chromosomes for a cross between two G. hirsutum lines.
Journal ArticleDOI
Reference quality assembly of the 3.5-Gb genome of Capsicum annuum from a single linked-read library.
Amanda M. Hulse-Kemp,Amanda M. Hulse-Kemp,Amanda M. Hulse-Kemp,Shamoni Maheshwari,Kevin Stoffel,Theresa Hill,David B. Jaffe,Stephen R. Williams,Neil I. Weisenfeld,Srividya Ramakrishnan,Vijay Kumar,Preyas Shah,Michael C. Schatz,Deanna M. Church,Allen Van Deynze +14 more
TL;DR: The most contiguous pepper genome assembly to date has been generated which demonstrates that Linked-Read library technology provides a tool to de novo assemble complex highly repetitive heterozygous plant genomes.
Journal ArticleDOI
Sequencing-Based Bin Map Construction of a Tomato Mapping Population, Facilitating High-Resolution Quantitative Trait Loci Detection.
Itay Gonda,Hamid Ashrafi,David A. Lyon,Susan R. Strickler,Amanda M. Hulse-Kemp,Amanda M. Hulse-Kemp,Qiyue Ma,Honghe Sun,Kevin Stoffel,Adrian F. Powell,Stephanie Futrell,Theodore W. Thannhauser,Zhangjun Fei,Allen Van Deynze,Lukas A. Mueller,James J. Giovannoni,James J. Giovannoni,Majid R. Foolad +17 more
TL;DR: Identification of SIZISO as the gene underlying the lycopene QTL Lyc12.1 RIL population, high‐resolution genetic map, and analytical pipeline available to the public.