S
Sam Griffiths-Jones
Researcher at University of Manchester
Publications - 120
Citations - 49386
Sam Griffiths-Jones is an academic researcher from University of Manchester. The author has contributed to research in topics: Gene & Genome. The author has an hindex of 54, co-authored 115 publications receiving 44697 citations. Previous affiliations of Sam Griffiths-Jones include University of Nottingham & Manchester Academic Health Science Centre.
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Journal ArticleDOI
The genome sequence of Caenorhabditis briggsae: A platform for comparative genomics
Lincoln Stein,Zhirong Bao,Zhirong Bao,Darin Blasiar,Thomas Blumenthal,Michael R. Brent,Nansheng Chen,Asif T. Chinwalla,Laura Clarke,Chris Clee,Avril Coghlan,Alan Coulson,Alan Coulson,Peter D'Eustachio,Peter D'Eustachio,David H. A. Fitch,Lucinda Fulton,Robert E Fulton,Sam Griffiths-Jones,Todd W. Harris,LaDeana W. Hillier,LaDeana W. Hillier,Ravi Kamath,Patricia E. Kuwabara,Elaine R. Mardis,Marco A. Marra,Marco A. Marra,Tracie L. Miner,Patrick Minx,James C. Mullikin,James C. Mullikin,Robert W. Plumb,Jane Rogers,Jacqueline E. Schein,Jacqueline E. Schein,Marc Sohrmann,John Spieth,Jason E. Stajich,Chaochun Wei,David Willey,Richard K. Wilson,Richard Durbin,Robert H. Waterston,Robert H. Waterston +43 more
TL;DR: Comparisons of the two genomes exhibit extensive colinearity, and the rate of divergence appears to be higher in the chromosomal arms than in the centers, which will help to understand the evolutionary forces that mold nematode genomes.
Journal ArticleDOI
Rfam: updates to the RNA families database
Paul P. Gardner,Jennifer Daub,John Tate,Eric P. Nawrocki,Diana L. Kolbe,Stinus Lindgreen,Adam C. Wilkinson,Robert D. Finn,Sam Griffiths-Jones,Sean R. Eddy,Alex Bateman +10 more
TL;DR: The primary aim of Rfam is to annotate new members of known RNA families on nucleotide sequences, particularly complete genomes, using sensitive BLAST filters in combination with CMs.
Journal ArticleDOI
The InterPro Database, 2003 brings increased coverage and new features
Nicola Mulder,Rolf Apweiler,Teresa K. Attwood,Amos Marc Bairoch,Daniel Barrell,Alex Bateman,David Binns,Margaret Biswas,Paul Bradley,Peer Bork,Phillip Bucher,Richard R. Copley,Emmanuel Courcelle,Ujjwal Das,Richard Durbin,Laurent Falquet,Wolfgang Fleischmann,Sam Griffiths-Jones,Daniel H. Haft,Nicola Harte,Nicolas Hulo,Daniel Kahn,Alexander Kanapin,Maria Krestyaninova,Rodrigo Lopez,Ivica Letunic,David M. Lonsdale,Ville Silventoinen,Sandra Orchard,Marco Pagni,David Peyruc,Chris P. Ponting,Jeremy D. Selengut,Florence Servant,Christian J. A. Sigrist,Robert M. Vaughan,Evgeny M. Zdobnov +36 more
TL;DR: The latest release of InterPro contains 5629 entries describing 4280 families, 1239 domains, 95 repeats and 15 post-translational modifications, an increase of nearly 15% since the inception of Inter pro.
Book ChapterDOI
miRBase:The MicroRNA Sequence Database
TL;DR: The methods outlined in this chapter describe these functions of the miRBase Sequence database, which provides a user-friendly web interface for miRNA data, and provides a confidential gene-naming service.
Journal ArticleDOI
Genomic analysis of human microRNA transcripts
TL;DR: A large-scale analysis of transcription start sites, polyadenylation signals, CpG islands, EST data, transcription factor-binding sites, and expression ditag data surrounding intergenic miRNAs in the human genome is performed to improve understanding of the structure of their primary transcripts.