S
Sam Griffiths-Jones
Researcher at University of Manchester
Publications - 120
Citations - 49386
Sam Griffiths-Jones is an academic researcher from University of Manchester. The author has contributed to research in topics: Gene & Genome. The author has an hindex of 54, co-authored 115 publications receiving 44697 citations. Previous affiliations of Sam Griffiths-Jones include University of Nottingham & Manchester Academic Health Science Centre.
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Journal ArticleDOI
A uniform system for microRNA annotation
Victor R. Ambros,Bonnie Bartel,David P. Bartel,Christopher B. Burge,James C. Carrington,Xuemei Chen,Gideon Dreyfuss,Sean R. Eddy,Sam Griffiths-Jones,Mhairi Marshall,Marjori Matzke,Gary Ruvkun,Thomas Tuschl +12 more
TL;DR: Guidelines are presented for the identification and annotation of new miRNAs from diverse organisms, particularly so that mi RNAs can be reliably distinguished from other RNAs such as small interfering RNAs.
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Rfam: annotating non-coding RNAs in complete genomes
TL;DR: The Rfam database aims to facilitate the identification and classification of new members of known sequence families, and distributes annotation of ncRNAs in over 200 complete genome sequences.
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Rfam: an RNA family database
TL;DR: The first release of Rfam (1.0) contains 25 families, which annotate over 50 000 non-coding RNA genes in the taxonomic divisions of the EMBL nucleotide database.
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Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae
James E. Galagan,Sarah E. Calvo,Christina A. Cuomo,Li-Jun Ma,Jennifer R. Wortman,Serafim Batzoglou,Su-In Lee,Meray Baştürkmen,Christina C. Spevak,John Clutterbuck,Vladimir V. Kapitonov,Jerzy Jurka,Claudio Scazzocchio,Mark L. Farman,Jonathan Butler,Seth Purcell,Steve Harris,Gerhard H. Braus,Oliver W. Draht,Silke Busch,Christophe d'Enfert,Christiane Bouchier,Gustavo H. Goldman,Deborah Bell-Pedersen,Sam Griffiths-Jones,John H. Doonan,Jae-Hyuk Yu,Kay Vienken,Arnab Pain,Michael Freitag,Eric U. Selker,David B. Archer,Miguel A. Peñalva,Berl R. Oakley,Michelle Momany,Toshihiro Tanaka,Toshitaka Kumagai,Kiyoshi Asai,Masayuki Machida,William C. Nierman,David W. Denning,Mark X. Caddick,Michael J. Hynes,Mathieu Paoletti,Reinhard Fischer,Reinhard Fischer,Bruce L. Miller,Paul S. Dyer,Matthew S. Sachs,Stephen A. Osmani,Bruce W. Birren +50 more
TL;DR: The aspergilli comprise a diverse group of filamentous fungi spanning over 200 million years of evolution, and a comparative study with Aspergillus fumigatus and As pergillus oryzae, used in the production of sake, miso and soy sauce, provides new insight into eukaryotic genome evolution and gene regulation.
Journal ArticleDOI
Criteria for Annotation of Plant MicroRNAs
Blake C. Meyers,Michael J. Axtell,Bonnie Bartel,David P. Bartel,David C. Baulcombe,John L. Bowman,Xiaofeng Cao,James C. Carrington,Xuemei Chen,Pamela J. Green,Sam Griffiths-Jones,Steven E. Jacobsen,Allison C. Mallory,Robert A. Martienssen,R. Scott Poethig,Yijun Qi,Hervé Vaucheret,Olivier Voinnet,Yuichiro Watanabe,Detlef Weigel,Jian-Kang Zhu +20 more
TL;DR: The specific criteria required for the annotation of plant miRNAs are updated, including experimental and computational data, as well as refinements to standard nomenclature.