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Shaun D. Fouse
Researcher at University of California, San Francisco
Publications - 24
Citations - 7507
Shaun D. Fouse is an academic researcher from University of California, San Francisco. The author has contributed to research in topics: DNA methylation & Epigenetics. The author has an hindex of 18, co-authored 24 publications receiving 6892 citations. Previous affiliations of Shaun D. Fouse include University of California, Los Angeles.
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Journal ArticleDOI
Conserved role of intragenic DNA methylation in regulating alternative promoters
Alika K. Maunakea,Raman P. Nagarajan,Mikhail Bilenky,Tracy J. Ballinger,Cletus D'Souza,Shaun D. Fouse,Brett E. Johnson,Chibo Hong,Cydney B. Nielsen,Yongjun Zhao,Gustavo Turecki,Allen Delaney,Richard Varhol,Nina Thiessen,Ksenya Shchors,Ksenya Shchors,Vivi M. Heine,David H. Rowitch,Xiaoyun Xing,Chris Fiore,Maximiliaan Schillebeeckx,Steven J.M. Jones,David Haussler,Marco A. Marra,Martin Hirst,Ting Wang,Ting Wang,Joseph F. Costello +27 more
TL;DR: An in-depth investigation of the human SHANK3 locus and its mouse homologue demonstrated that this tissue-specific DNA methylation regulates intragenic promoter activity in vitro and in vivo.
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DNA methylation-related chromatin remodeling in activity-dependent BDNF gene regulation.
TL;DR: It is reported that increased synthesis of brain-derived neurotrophic factor in neurons after depolarization correlates with a decrease in CpG methylation within the regulatory region of the Bdnf gene, suggesting that DNA methylation–related chromatin remodeling is important for activity-dependent gene regulation that may be critical for neural plasticity.
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Mutational Analysis Reveals the Origin and Therapy-Driven Evolution of Recurrent Glioma
Brett E. Johnson,Tali Mazor,Chibo Hong,Michael R. Barnes,Koki Aihara,Cory Y. McLean,Shaun D. Fouse,Shogo Yamamoto,Hiroki R. Ueda,Kenji Tatsuno,Saurabh Asthana,Llewellyn E. Jalbert,Sarah J. Nelson,Andrew W. Bollen,W. Clay Gustafson,Elise Charron,William A. Weiss,Ivan Smirnov,Jun S. Song,Adam B. Olshen,Soonmee Cha,Yongjun Zhao,Richard A. Moore,Andrew J. Mungall,Steven J.M. Jones,Martin Hirst,Marco A. Marra,Nobuhito Saito,Hiroyuki Aburatani,Akitake Mukasa,Mitchel S. Berger,Susan M. Chang,Barry S. Taylor,Joseph F. Costello +33 more
TL;DR: Exome sequencing of exomes of 23 initial low-grade gliomas and recurrent tumors resected from the same patients suggests that recurrent tumors are often seeded by cells derived from the initial tumor at a very early stage of their evolution.
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Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications
R. Alan Harris,Ting Wang,Cristian Coarfa,Raman P. Nagarajan,Chibo Hong,Sara L. Downey,Brett E. Johnson,Shaun D. Fouse,Allen Delaney,Yongjun Zhao,Adam B. Olshen,Tracy J. Ballinger,Xin Zhou,Kevin J. Forsberg,Junchen Gu,Lorigail Echipare,Henriette O'Geen,Ryan Lister,Mattia Pelizzola,Yuanxin Xi,Charles B. Epstein,Bradley E. Bernstein,R. David Hawkins,Bing Ren,Wen-Yu Chung,Hongcang Gu,Christoph Bock,Andreas Gnirke,Michael Q. Zhang,David Haussler,Joseph A. Ecker,Wei Li,Peggy J. Farnham,Robert A. Waterland,Alexander Meissner,Marco A. Marra,Martin Hirst,Aleksandar Milosavljevic,Joseph F. Costello +38 more
TL;DR: This work combined MeDIP-seq with methylation-sensitive restriction enzyme (MRE-seq) sequencing for comprehensive methylome coverage at lower cost and detected regions with allele-specific epigenetic states, identifying most known imprinted regions and new loci with Monoallelic epigenetic marks and monoallelic expression.
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VEGF Inhibits Tumor Cell Invasion and Mesenchymal Transition through a MET/VEGFR2 Complex
Kan V. Lu,Jeffrey P. Chang,Christine A. Parachoniak,Melissa M. Pandika,Manish K. Aghi,David Meyronet,Nadezhda Isachenko,Shaun D. Fouse,Joanna J. Phillips,David A. Cheresh,Morag Park,Gabriele Bergers +11 more
TL;DR: It is demonstrated that vascular endothelial growth factor (VEGF) directly and negatively regulates tumor cell invasion through enhanced recruitment of the protein tyrosine phosphatase 1B to a MET/VEGFR2 heterocomplex, thereby suppressing HGF-dependent MET phosphorylation and tumor cell migration.