S
ShengQiang Shu
Researcher at University of California, Berkeley
Publications - 7
Citations - 4154
ShengQiang Shu is an academic researcher from University of California, Berkeley. The author has contributed to research in topics: Genome & Gene. The author has an hindex of 6, co-authored 7 publications receiving 3826 citations. Previous affiliations of ShengQiang Shu include Lawrence Berkeley National Laboratory.
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Journal ArticleDOI
AmiGO: online access to ontology and annotation data
Seth Carbon,Amelia Ireland,Christopher J. Mungall,ShengQiang Shu,Brad Marshall,Suzanna E. Lewis +5 more
TL;DR: AmiGO is a web application that allows users to query, browse and visualize ontologies and related gene product annotation (association) data.
Journal ArticleDOI
The Generic Genome Browser: A Building Block for a Model Organism System Database
Lincoln Stein,Christopher J. Mungall,ShengQiang Shu,Michael Caudy,Marco Mangone,Allen Day,Elizabeth Nickerson,Jason E. Stajich,Todd W. Harris,Adrian Arva,Suzanna E. Lewis +10 more
TL;DR: The Generic Genome Browser (GBrowse) is described, a Web-based application for displaying genomic annotations and other features and easy integration with other components of a model organism system Web site.
Journal ArticleDOI
Systematic determination of patterns of gene expression during Drosophila embryogenesis
Pavel Tomancak,Amy Beaton,Richard Weiszmann,Elaine Kwan,ShengQiang Shu,Suzanna E. Lewis,Stephen Richards,Michael Ashburner,Volker Hartenstein,Susan E. Celniker,Gerald M. Rubin,Gerald M. Rubin +11 more
TL;DR: Analyzing gene-expression patterns by in situ hybridization to whole-mount embryos provides an extremely rich dataset that can be used to identify genes involved in developmental processes that have been missed by traditional genetic analysis.
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Annotation of the Drosophila melanogaster euchromatic genome: a systematic review.
Sima Misra,Madeline A. Crosby,Christopher J. Mungall,Beverley B. Matthews,Kathryn S. Campbell,Pavel Hradecky,Yanmei Huang,Joshua S. Kaminker,Gillian Millburn,Simon Prochnik,Christopher D. Smith,Jonathan L. Tupy,Eleanor J Whitfield,Leyla Bayraktaroglu,Benjamin P. Berman,Bettencourt Brian,Susan E. Celniker,Aubrey D.N.J. de Grey,Rachel Drysdale,Nomi L. Harris,Nomi L. Harris,J. Richter,Susan M. Russo,Andrew J. Schroeder,ShengQiang Shu,Mark Stapleton,Chihiro Yamada,Michael Ashburner,William M. Gelbart,Gerald M. Rubin,Suzanna E. Lewis +30 more
TL;DR: Identification of so many unusual gene models in Drosophila suggests that some mechanisms for gene regulation are more prevalent than previously believed, and underscores the complex challenges of eukaryotic gene prediction.
Journal ArticleDOI
The Release 5.1 annotation of Drosophila melanogaster heterochromatin.
TL;DR: Improved methods revealed that more than 77% of this heterochromatin sequence, including introns and intergenic regions, is composed of fragmented and nested transposable elements and other repeated DNAs.