S
Sudharshan Rangarajan
Researcher at Harvard University
Publications - 5
Citations - 717
Sudharshan Rangarajan is an academic researcher from Harvard University. The author has contributed to research in topics: Interactome & Human interactome. The author has an hindex of 3, co-authored 5 publications receiving 327 citations.
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Journal ArticleDOI
A reference map of the human binary protein interactome
Katja Luck,Dae-Kyum Kim,Luke Lambourne,Kerstin Spirohn,Bridget E. Begg,Wenting Bian,Ruth Brignall,Tiziana M. Cafarelli,Francisco J. Campos-Laborie,Benoit Charloteaux,Dong-Sic Choi,Atina G. Cote,Meaghan Daley,Steven Deimling,Alice Desbuleux,Amélie Dricot,Marinella Gebbia,Madeleine F. Hardy,Nishka Kishore,Jennifer J. Knapp,István Kovács,István Kovács,Irma Lemmens,Irma Lemmens,Miles W. Mee,Joseph C. Mellor,Carl Pollis,Carles Pons,Aaron Richardson,Sadie Schlabach,Bridget Teeking,Anupama Yadav,Mariana Babor,Dawit Balcha,Omer Basha,Christian Bowman-Colin,Suet-Feung Chin,Soon Gang Choi,Claudia Colabella,Georges Coppin,Cassandra D’Amata,David De Ridder,Steffi De Rouck,Steffi De Rouck,Miquel Duran-Frigola,Hanane Ennajdaoui,Florian Goebels,Liana Goehring,Anjali Gopal,Ghazal Haddad,Elodie Hatchi,Mohamed Helmy,Yves Jacob,Yves Jacob,Yoseph Kassa,Serena Landini,Roujia Li,Natascha van Lieshout,Andrew MacWilliams,Dylan Markey,Joseph N. Paulson,Joseph N. Paulson,Sudharshan Rangarajan,John Rasla,Ashyad Rayhan,Thomas Rolland,Adriana San-Miguel,Yun Shen,Dayag Sheykhkarimli,Gloria M. Sheynkman,Eyal Simonovsky,Murat Tasan,Alexander O. Tejeda,Vincent Tropepe,Jean-Claude Twizere,Yang Wang,Robert J. Weatheritt,Jochen Weile,Yu Xia,Yu Xia,Xinping Yang,Esti Yeger-Lotem,Quan Zhong,Patrick Aloy,Gary D. Bader,Javier De Las Rivas,Suzanne Gaudet,Tong Hao,Janusz Rak,Jan Tavernier,Jan Tavernier,David E. Hill,Marc Vidal,Frederick P. Roth,Michael A. Calderwood +94 more
TL;DR: The utility of HuRI is demonstrated in identifying the specific subcellular roles of protein–protein interactions and in identifying potential molecular mechanisms that might underlie tissue-specific phenotypes of Mendelian diseases.
Journal ArticleDOI
Maximizing binary interactome mapping with a minimal number of assays.
Soon Gang Choi,Julien Olivet,Patricia Cassonnet,Pierre-Olivier Vidalain,Katja Luck,Luke Lambourne,Kerstin Spirohn,Irma Lemmens,Irma Lemmens,Mélanie Dos Santos,Caroline Demeret,Louis Jones,Sudharshan Rangarajan,Wenting Bian,Eloi P. Coutant,Yves L. Janin,Sylvie van der Werf,Philipp Trepte,Philipp Trepte,Erich E. Wanker,Javier De Las Rivas,Jan Tavernier,Jan Tavernier,Jean-Claude Twizere,Tong Hao,David E. Hill,Marc Vidal,Michael A. Calderwood,Yves Jacob,Yves Jacob +29 more
TL;DR: The authors show that complete coverage could be reached with a minimal number of assays as long as they explore various experimental conditions, and suggest that developing alternative versions of existing assays might be as productive as designing completely new assays.
Posted ContentDOI
A reference map of the human protein interactome
Katja Luck,Dae-Kyum Kim,Dae-Kyum Kim,Luke Lambourne,Kerstin Spirohn,Bridget E. Begg,Wenting Bian,Ruth Brignall,Tiziana M. Cafarelli,Francisco J. Campos-Laborie,Benoit Charloteaux,Dong-Sic Choi,Atina G. Cote,Atina G. Cote,Meaghan Daley,Steven Deimling,Alice Desbuleux,Alice Desbuleux,Amélie Dricot,Marinella Gebbia,Marinella Gebbia,Madeleine F. Hardy,Nishka Kishore,Nishka Kishore,Jennifer J. Knapp,Jennifer J. Knapp,István Kovács,István Kovács,István Kovács,Irma Lemmens,Irma Lemmens,Miles W. Mee,Joseph C. Mellor,Joseph C. Mellor,Carl Pollis,Carles Pons,Aaron Richardson,Sadie Schlabach,Bridget Teeking,Anupama Yadav,Mariana Babor,Mariana Babor,Dawit Balcha,Omer Basha,Christian Bowman-Colin,Suet-Feung Chin,Soon Gang Choi,Claudia Colabella,Georges Coppin,Georges Coppin,Cassandra D’Amata,David De Ridder,Steffi De Rouck,Steffi De Rouck,Miquel Duran-Frigola,Hanane Ennajdaoui,Hanane Ennajdaoui,Florian Goebels,Liana Goehring,Anjali Gopal,Anjali Gopal,Ghazal Haddad,Ghazal Haddad,Elodie Hatchi,Mohamed Helmy,Yves Jacob,Yves Jacob,Yoseph Kassa,Serena Landini,Roujia Li,Roujia Li,Natascha van Lieshout,Natascha van Lieshout,Andrew MacWilliams,Dylan Markey,Joseph N. Paulson,Joseph N. Paulson,Sudharshan Rangarajan,John Rasla,Ashyad Rayhan,Ashyad Rayhan,Thomas Rolland,Adriana San-Miguel,Yun Shen,Dayag Sheykhkarimli,Dayag Sheykhkarimli,Gloria M. Sheynkman,Eyal Simonovsky,Murat Tasan,Murat Tasan,Alexander O. Tejeda,Jean-Claude Twizere,Yang Wang,Robert J. Weatheritt,Jochen Weile,Jochen Weile,Yu Xia,Yu Xia,Xinping Yang,Esti Yeger-Lotem,Quan Zhong,Quan Zhong,Patrick Aloy,Gary D. Bader,Javier De Las Rivas,Suzanne Gaudet,Tong Hao,Janusz Rak,Jan Tavernier,Jan Tavernier,Vincent Tropepe,David E. Hill,Marc Vidal,Frederick P. Roth,Frederick P. Roth,Frederick P. Roth,Michael A. Calderwood +116 more
TL;DR: The first human “all-by-all” binary reference interactome map, or HuRI, is presented and it is demonstrated the use of HuRI in identifying specific subcellular roles of PPIs and protein function modulation via splicing during brain development.
Posted ContentDOI
Towards an \'\'assayome\'\' for binary interactome mapping
Soon Gang Choi,Julien Olivet,Julien Olivet,Patricia Cassonnet,Pierre-Olivier Vidalain,Katja Luck,Luke Lambourne,Kerstin Spirohn,Irma Lemmens,Mélanie Dos Santos,Caroline Demeret,Louis Jones,Sudharshan Rangarajan,Wenting Bian,Eloi P. Coutant,Yves L. Janin,Sylvie van der Werf,Javier De Las Rivas,Jan Tavernier,Jean-Claude Twizere,Tong Hao,David E. Hill,Marc Vidal,Michael A. Calderwood,Yves Jacob,Yves Jacob +25 more
TL;DR: The concept of an “assayome” for binary protein-protein interaction (PPI) mapping is proposed as an optimal combination of assays and/or assay versions that maximizes detection of true positive interactions, while avoiding detection of random protein pairs.
Posted ContentDOI
Maximizing binary interactome mapping with a minimal number of assays
Soon Gang Choi,Julien Olivet,Patricia Cassonnet,Pierre-Olivier Vidalain,Katja Luck,Luke Lambourne,Kerstin Spirohn,Irma Lemmens,Irma Lemmens,Mélanie Dos Santos,Caroline Demeret,Louis Jones,Sudharshan Rangarajan,Wenting Bian,Eloi P. Coutant,Yves L. Janin,Sylvie van der Werf,Philipp Trepte,Philipp Trepte,Erich E. Wanker,Javier De Las Rivas,Jan Tavernier,Jan Tavernier,Jean-Claude Twizere,Tong Hao,David E. Hill,Marc Vidal,Michael A. Calderwood,Yves Jacob,Yves Jacob +29 more
TL;DR: A framework for binary protein-protein interaction (PPI) mapping based on optimally combining assays and/or assay versions to maximize detection of true positive interactions, while avoiding detection of random protein pairs is proposed.