K
Kerstin Spirohn
Researcher at Harvard University
Publications - 30
Citations - 3309
Kerstin Spirohn is an academic researcher from Harvard University. The author has contributed to research in topics: Interactome & Biology. The author has an hindex of 15, co-authored 23 publications receiving 2365 citations. Previous affiliations of Kerstin Spirohn include German Cancer Research Center & Heidelberg University.
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Journal ArticleDOI
A proteome-scale map of the human interactome network
Thomas Rolland,Murat Tasan,Benoit Charloteaux,Samuel J. Pevzner,Quan Zhong,Quan Zhong,Nidhi Sahni,Song Yi,Irma Lemmens,Celia Fontanillo,Roberto Mosca,Atanas Kamburov,Susan Dina Ghiassian,Susan Dina Ghiassian,Xinping Yang,Lila Ghamsari,Dawit Balcha,Bridget E. Begg,Pascal Braun,Marc Brehme,Martin P. Broly,Anne-Ruxandra Carvunis,Dan Convery-Zupan,Roser Corominas,Jasmin Coulombe-Huntington,Jasmin Coulombe-Huntington,Elizabeth Dann,Matija Dreze,Amélie Dricot,Changyu Fan,Eric A. Franzosa,Eric A. Franzosa,Fana Gebreab,Bryan J. Gutierrez,Madeleine F. Hardy,Mike Jin,Shuli Kang,Ruth Kiros,Guan Ning Lin,Katja Luck,Andrew MacWilliams,Jörg Menche,Jörg Menche,Ryan R. Murray,Alexandre Palagi,Matthew M. Poulin,Xavier Rambout,Xavier Rambout,John Rasla,Patrick Reichert,Viviana Romero,Elien Ruyssinck,Julie M. Sahalie,Annemarie Scholz,Akash A. Shah,Amitabh Sharma,Amitabh Sharma,Yun Shen,Kerstin Spirohn,Stanley Tam,Alexander O. Tejeda,Shelly A. Trigg,Jean-Claude Twizere,Jean-Claude Twizere,Kerwin Vega,Jennifer M. Walsh,Michael E. Cusick,Yu Xia,Yu Xia,Albert-László Barabási,Albert-László Barabási,Albert-László Barabási,Lilia M. Iakoucheva,Patrick Aloy,Javier De Las Rivas,Jan Tavernier,Michael A. Calderwood,David E. Hill,Tong Hao,Frederick P. Roth,Marc Vidal +80 more
TL;DR: The map uncovers significant interconnectivity between known and candidate cancer gene products, providing unbiased evidence for an expanded functional cancer landscape, while demonstrating how high-quality interactome models will help "connect the dots" of the genomic revolution.
Journal ArticleDOI
A reference map of the human binary protein interactome
Katja Luck,Dae-Kyum Kim,Luke Lambourne,Kerstin Spirohn,Bridget E. Begg,Wenting Bian,Ruth Brignall,Tiziana M. Cafarelli,Francisco J. Campos-Laborie,Benoit Charloteaux,Dong-Sic Choi,Atina G. Cote,Meaghan Daley,Steven Deimling,Alice Desbuleux,Amélie Dricot,Marinella Gebbia,Madeleine F. Hardy,Nishka Kishore,Jennifer J. Knapp,István Kovács,István Kovács,Irma Lemmens,Irma Lemmens,Miles W. Mee,Joseph C. Mellor,Carl Pollis,Carles Pons,Aaron Richardson,Sadie Schlabach,Bridget Teeking,Anupama Yadav,Mariana Babor,Dawit Balcha,Omer Basha,Christian Bowman-Colin,Suet-Feung Chin,Soon Gang Choi,Claudia Colabella,Georges Coppin,Cassandra D’Amata,David De Ridder,Steffi De Rouck,Steffi De Rouck,Miquel Duran-Frigola,Hanane Ennajdaoui,Florian Goebels,Liana Goehring,Anjali Gopal,Ghazal Haddad,Elodie Hatchi,Mohamed Helmy,Yves Jacob,Yves Jacob,Yoseph Kassa,Serena Landini,Roujia Li,Natascha van Lieshout,Andrew MacWilliams,Dylan Markey,Joseph N. Paulson,Joseph N. Paulson,Sudharshan Rangarajan,John Rasla,Ashyad Rayhan,Thomas Rolland,Adriana San-Miguel,Yun Shen,Dayag Sheykhkarimli,Gloria M. Sheynkman,Eyal Simonovsky,Murat Tasan,Alexander O. Tejeda,Vincent Tropepe,Jean-Claude Twizere,Yang Wang,Robert J. Weatheritt,Jochen Weile,Yu Xia,Yu Xia,Xinping Yang,Esti Yeger-Lotem,Quan Zhong,Patrick Aloy,Gary D. Bader,Javier De Las Rivas,Suzanne Gaudet,Tong Hao,Janusz Rak,Jan Tavernier,Jan Tavernier,David E. Hill,Marc Vidal,Frederick P. Roth,Michael A. Calderwood +94 more
TL;DR: The utility of HuRI is demonstrated in identifying the specific subcellular roles of protein–protein interactions and in identifying potential molecular mechanisms that might underlie tissue-specific phenotypes of Mendelian diseases.
Journal ArticleDOI
Widespread Expansion of Protein Interaction Capabilities by Alternative Splicing
Xinping Yang,Xinping Yang,Jasmin Coulombe-Huntington,Shuli Kang,Gloria M. Sheynkman,Tong Hao,Aaron Richardson,Song Sun,Song Sun,Fan Yang,Yun A. Shen,Ryan R. Murray,Ryan R. Murray,Kerstin Spirohn,Bridget E. Begg,Bridget E. Begg,Miquel Duran-Frigola,Andrew MacWilliams,Samuel J. Pevzner,Samuel J. Pevzner,Quan Zhong,Quan Zhong,Shelly A. Trigg,Stanley Tam,Lila Ghamsari,Nidhi Sahni,Song Yi,Maria D. Rodriguez,Maria D. Rodriguez,Dawit Balcha,Guihong Tan,Michael Costanzo,Brenda J. Andrews,Charles Boone,Xianghong Jasmine Zhou,Kourosh Salehi-Ashtiani,Kourosh Salehi-Ashtiani,Benoit Charloteaux,Benoit Charloteaux,Alyce A. Chen,Michael A. Calderwood,Patrick Aloy,Frederick P. Roth,Frederick P. Roth,Frederick P. Roth,David E. Hill,Lilia M. Iakoucheva,Yu Xia,Yu Xia,Marc Vidal +49 more
TL;DR: This work cloned full-length open reading frames of alternatively spliced transcripts for a large number of human genes and used protein-protein interaction profiling to functionally compare hundreds of protein isoform pairs, revealing a widespread expansion of protein interaction capabilities through alternative splicing and suggesting that many alternative "isoforms" are functionally divergent (i.e., "functional alloforms").
Journal ArticleDOI
Network-based prediction of protein interactions.
István Kovács,Katja Luck,Kerstin Spirohn,Yang Wang,Carl Pollis,Sadie Schlabach,Wenting Bian,Dae-Kyum Kim,Dae-Kyum Kim,Nishka Kishore,Nishka Kishore,Tong Hao,Michael A. Calderwood,Marc Vidal,Albert-László Barabási +14 more
TL;DR: It is shown that proteins tend to interact if one is similar to the other’s partners and that PPI prediction based on this principle is highly accurate and can offer mechanistic insights into disease mechanisms and complement future experimental efforts to complete the human interactome.
Posted ContentDOI
Network-based prediction of protein interactions
István Kovács,Katja Luck,Kerstin Spirohn,Yang Wang,Carl Pollis,Sadie Schlabach,Wenting Bian,Dae-Kyum Kim,Nishka Kishore,Tong Hao,Michael A. Calderwood,Marc Vidal,Albert-László Barabási +12 more
TL;DR: A fundamental organizing principle of biological networks is unveiled, L3, that predicts yet uncovered protein interactions based on paths of length three (L3) and is expected to have a broad applicability, enabling to better understand the emergence of biological function under both healthy and pathological conditions.