S
Suhua Shi
Researcher at Sun Yat-sen University
Publications - 141
Citations - 5379
Suhua Shi is an academic researcher from Sun Yat-sen University. The author has contributed to research in topics: Population & Mangrove. The author has an hindex of 37, co-authored 131 publications receiving 4525 citations.
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miREvo: an integrative microRNA evolutionary analysis platform for next-generation sequencing experiments
TL;DR: An integrated pipline for exploring the expressional and evolutionary dynamics of miRNAs across multiple species is presented, miREvo, an integrated software platform with a graphical user interface (GUI), to process deep-sequencing data of small RNAs and to analyze miRNA sequence and expression evolution based on the multiple-species whole genome alignments (WGAs).
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Statistical Tests for Detecting Positive Selection by Utilizing High-Frequency Variants
TL;DR: Simulations indicate that D and H in combination can be most effective in detecting positive selection while being insensitive to other perturbations, and a joint test, referred to as the DH test, is proposed.
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The birth and death of microRNA genes in Drosophila
Jian Lu,Yang Shen,Qingfa Wu,Supriya Kumar,Bin Z. He,Suhua Shi,Richard W. Carthew,San Ming Wang,Chung-I Wu,Chung-I Wu +9 more
TL;DR: It is suggested that there is a high birth rate of new miRNA genes, accompanied by a comparably high death rate in Drosophila, and that a small fraction of surviving miRNAs may later on become moderately or highly expressed.
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The accumulation of deleterious mutations in rice genomes: a hypothesis on the cost of domestication.
TL;DR: It is hypothesized that during domestication artificial selection increased the frequency of many deleterious mutations, and 'hitchhiking' has occurred in rice domestication.
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Two Evolutionary Histories in the Genome of Rice: the Roles of Domestication Genes
Ziwen He,Weiwei Zhai,Haijun Wen,Tian Tang,Yu Wang,Yu Wang,Xuemei Lu,Anthony J. Greenberg,Richard R. Hudson,Chung-I Wu,Chung-I Wu,Chung-I Wu,Suhua Shi +12 more
TL;DR: It is found that the genealogical histories of these overlapping LDRs are distinct from the genomic background, and several known domestication genes have indeed been “rediscovered” by this approach.