Thomas Abeel

TL;DR: Java-ML is a collection of machine learning and data mining algorithms, which aims to be a readily usable and easily extensible API for both software developers and research scientists.

TL;DR: A comparative analysis of protein evolution highlights gene families that are associated with the adaptation of environmental Mycobacteria to obligate pathogenesis, including fatty acid metabolism, DNA repair, and molybdopterin biosynthesis and reinforces recent findings suggesting that small noncoding RNAs are more common in Myc Cobacteria than previously expected.

TL;DR: In the largest and most comprehensive comparison of sequenced Fusobacterium species to date, this study generates a testable model for the molecular pathogenesis of FusOBacterium infection and illuminate new therapeutic or diagnostic strategies.

TL;DR: It is shown that unsupervised clustering by using self-organizing maps can clearly distinguish between the structural profiles of promoter sequences and other genomic sequences, and an implementation of this promoter prediction program, called ProSOM, is available and has been compared with the state of the art.

TL;DR: A multi-faceted evaluation strategy is proposed that can be used as a gold standard for promoter prediction evaluation, allowing authors of promoter prediction software to compare their method to existing methods in a proper way.