T
Tingting Zhu
Researcher at University of California, Davis
Publications - 40
Citations - 2169
Tingting Zhu is an academic researcher from University of California, Davis. The author has contributed to research in topics: Genome & Aegilops tauschii. The author has an hindex of 18, co-authored 34 publications receiving 1342 citations. Previous affiliations of Tingting Zhu include Chinese Academy of Sciences & University of California.
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Journal ArticleDOI
Genome sequence of the progenitor of the wheat D genome Aegilops tauschii
Ming-Cheng Luo,Yong Q. Gu,Daniela Puiu,Hao Wang,Sven Twardziok,Karin R. Deal,Naxin Huo,Naxin Huo,Tingting Zhu,Le Wang,Yi Wang,Yi Wang,Patrick E. McGuire,Shuyang Liu,Hai Long,Ramesh K Ramasamy,Juan C Rodriguez,Sonny Lee Van,Luxia Yuan,Zhenzhong Wang,Zhenzhong Wang,Zhiqiang Xia,Lichan Xiao,Olin D. Anderson,Shuhong Ouyang,Shuhong Ouyang,Yong Liang,Yong Liang,Aleksey V. Zimin,Geo Pertea,Peng Qi,Jeffrey L. Bennetzen,Xiongtao Dai,Matthew W Dawson,Hans-Georg Müller,Karl G. Kugler,Lorena Rivarola-Duarte,Manuel Spannagl,Klaus F. X. Mayer,Fu-Hao Lu,Michael W. Bevan,Philippe Leroy,Pingchuan Li,Frank M. You,Qixin Sun,Zhiyong Liu,Eric Lyons,Thomas Wicker,Steven L. Salzberg,Steven L. Salzberg,Katrien M. Devos,Jan Dvořák +51 more
TL;DR: It is proposed that the vast amounts of very similar repeated sequences cause frequent errors in recombination and lead to gene duplications and structural chromosome changes that drive fast genome evolution.
Journal ArticleDOI
Hybrid assembly of the large and highly repetitive genome of Aegilops tauschii, a progenitor of bread wheat, with the MaSuRCA mega-reads algorithm.
Aleksey V. Zimin,Daniela Puiu,Ming-Cheng Luo,Tingting Zhu,Sergey Koren,Guillaume Marçais,James A. Yorke,Jan Dvořák,Steven L. Salzberg +8 more
TL;DR: This work describes an algorithm that solves the high error rate problem by combining long, high-error reads with shorter but much more accurate Illumina sequencing reads, whose error rates average <1%.
Journal ArticleDOI
The genome of cowpea (Vigna unguiculata [L.] Walp.)
Stefano Lonardi,María Muñoz-Amatriaín,Qihua Liang,Shengqiang Shu,Steve Wanamaker,Sassoum Lo,Jaakko Tanskanen,Alan H. Schulman,Tingting Zhu,Ming-Cheng Luo,Hind Alhakami,Rachid Ounit,Abid Hasan,Jerome Verdier,Philip A. Roberts,Jansen R. P. Santos,Jansen R. P. Santos,Arsenio Ndeve,Jaroslav Doležel,Jan Vrána,Samuel Hokin,Andrew Farmer,Steven B. Cannon,Timothy J. Close +23 more
TL;DR: A comparative analysis of elements suggests that genome size differences between Vigna species are mainly attributable to changes in the amount of Gypsy retrotransposons, and genes are more abundant in more distal, high‐recombination regions of the chromosomes.
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Optical maps refine the bread wheat Triticum aestivum cv. Chinese Spring genome assembly.
Tingting Zhu,Le Wang,Hélène Rimbert,Juan C Rodriguez,Karin R. Deal,Romain De Oliveira,Frédéric Choulet,Gabriel Keeble-Gagnère,Josquin Tibbits,Jane Rogers,Kellye Eversole,Rudi Appels,Yong Q. Gu,Martin Mascher,Jan Dvorak,Ming-Cheng Luo +15 more
TL;DR: This article used a direct label and stain (DLS) optical map of the Chinese Spring (CS) genome together with a prior nick, label, repair and stain optical map, and sequence contigs assembled with Pacific Biosciences long reads, to refine the v1.0 assembly.
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Phylogenetic analyses unravel the evolutionary history of nac proteins in plants
TL;DR: It is hypothesized that NAC proteins probably originated sometime more than 400 million years ago and expanded together with the differentiation of plants into organisms of increasing complexity possibly after the divergence of lycophytes from the other vascular plants.