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Xiaofeng Li
Researcher at Beijing Genomics Institute
Publications - 6
Citations - 639
Xiaofeng Li is an academic researcher from Beijing Genomics Institute. The author has contributed to research in topics: Grouper & Transcriptome. The author has an hindex of 6, co-authored 6 publications receiving 447 citations. Previous affiliations of Xiaofeng Li include Chinese Academy of Sciences.
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Journal ArticleDOI
Comprehensive phylogeny of ray-finned fishes (Actinopterygii) based on transcriptomic and genomic data.
Lily C. Hughes,Guillermo Ortí,Guillermo Ortí,Yu Huang,Ying Sun,Carole C. Baldwin,Andrew W. Thompson,Dahiana Arcila,Dahiana Arcila,Ricardo Betancur-R.,Ricardo Betancur-R.,Chenhong Li,Leandro Anibal Becker,Nicolás Bellora,Xiaomeng Zhao,Xiaomeng Zhao,Xiaofeng Li,Xiaofeng Li,Min Wang,Chao Fang,Bing Xie,Zhuocheng Zhou,Hai Huang,Songlin Chen,Byrappa Venkatesh,Qiong Shi +25 more
TL;DR: It is suggested that most lineages of living fishes were already established in the Mesozoic Period, more than 65 million years ago, and genome-scale data support the structure of the fish phylogeny.
Journal ArticleDOI
The Asian arowana (Scleropages formosus) genome provides new insights into the evolution of an early lineage of teleosts.
Chao Bian,Yinchang Hu,Vydianathan Ravi,Inna S. Kuznetsova,Inna S. Kuznetsova,Xueyan Shen,Xidong Mu,Ying Sun,Xinxin You,Jia Li,Xiaofeng Li,Ying Qiu,Boon-Hui Tay,Natascha May Thevasagayam,Aleksey Komissarov,Vladimir A. Trifonov,Vladimir A. Trifonov,Marsel R. Kabilov,Alexey E. Tupikin,Jianren Luo,Yi Liu,Hongmei Song,Chao Liu,Xuejie Wang,Dangen Gu,Yexin Yang,Wujiao Li,Gianluca Polgar,Guangyi Fan,Peng Zeng,He Zhang,Zijun Xiong,Zhujing Tang,Chao Peng,Zhiqiang Ruan,Hui Yu,Jieming Chen,Mingjun Fan,Yu Huang,Min Wang,Xiaomeng Zhao,Guojun Hu,Huanming Yang,Jian Wang,Jun Wang,Xun Xu,Linsheng Song,Gangchun Xu,Pao Xu,Junmin Xu,Stephen J. O'Brien,Stephen J. O'Brien,László Orbán,László Orbán,László Orbán,Byrappa Venkatesh,Qiong Shi +56 more
TL;DR: A potential heterogametic sex chromosome is identified in the female arowana karyotype, suggesting that the sex is determined by a ZW/ZZ sex chromosomal system, and differential gene expression among three varieties provides insights into the genetic basis of colour variation.
Journal ArticleDOI
Transcriptome analysis reveals the molecular mechanisms underlying growth superiority in a novel grouper hybrid ( Epinephelus fuscogutatus ♀ × E. lanceolatus ♂)
Ying Sun,Chuan-Yu Guo,Dengdong Wang,Xiaofeng Li,Ling Xiao,Xinhui Zhang,Xinxin You,Qiong Shi,Guo-Jun Hu,Chao Fang,Haoran Lin,Yong Zhang +11 more
TL;DR: Comparison transcriptome analyses between Hulong grouper and its parents provided molecular basis underlying growth superiority of hybrid grouper, and comprehensive insights into better understanding the molecular mechanisms and regulative pathways regulating heterosis in fish.
Journal ArticleDOI
Fish-T1K (Transcriptomes of 1,000 Fishes) Project: large-scale transcriptome data for fish evolution studies
Ying Sun,Yu Huang,Xiaofeng Li,Carole C. Baldwin,Zhuocheng Zhou,Zhixiang Yan,Keith A. Crandall,Yong Zhang,Xiaomeng Zhao,Min Wang,Alex Wong,Chao Fang,Xinhui Zhang,Hai Huang,Jose V. Lopez,Kirk Kilfoyle,Guillermo Ortí,Byrappa Venkatesh,Qiong Shi +18 more
TL;DR: An international project known as the “Transcriptomes of 1,000 Fishes” (Fish-T1K) project has been established to generate RNA-seq transcriptome sequences for 1, thousand diverse species of ray-finned fishes.
Journal ArticleDOI
Comparative Transcriptomic Study of Muscle Provides New Insights into the Growth Superiority of a Novel Grouper Hybrid.
Ying Sun,Yu Huang,Guo-Jun Hu,Xinhui Zhang,Zhiqiang Ruan,Xiaomeng Zhao,Chuan-Yu Guo,Zhujing Tang,Xiaofeng Li,Xinxin You,Haoran Lin,Yong Zhang,Qiong Shi +12 more
TL;DR: Muscle contraction inducing growth could be the major contributor to the growth superiority in the authors' novel hybrid grouper, which may be a common mechanism for hybrid superiority in fishes.