Y
Yong Zhang
Researcher at Chinese Academy of Sciences
Publications - 1147
Citations - 35088
Yong Zhang is an academic researcher from Chinese Academy of Sciences. The author has contributed to research in topics: Medicine & Computer science. The author has an hindex of 69, co-authored 406 publications receiving 28281 citations. Previous affiliations of Yong Zhang include University of Chicago & Beijing Institute of Genomics.
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Journal ArticleDOI
WEGO: a web tool for plotting GO annotations
Jia Ye,Lin Fang,Hongkun Zheng,Yong Zhang,Jie Chen,Zengjin Zhang,Jing Wang,Shengting Li,Ruiqiang Li,Lars Bolund,Jun Wang +10 more
TL;DR: WEGO (Web Gene Ontology Annotation Plot) is a simple but useful tool for visualizing, comparing and plotting GO annotation results, designed to deal with the directed acyclic graph structure of GO to facilitate histogram creation of Go annotation results.
Journal ArticleDOI
CPC: assess the protein-coding potential of transcripts using sequence features and support vector machine
TL;DR: A support vector machine-based classifier, named Coding Potential Calculator (CPC), to assess the protein-coding potential of a transcript based on six biologically meaningful sequence features, which can discriminate coding from noncoding transcripts with high accuracy.
Journal ArticleDOI
Phylogenomics resolves the timing and pattern of insect evolution
Bernhard Misof,Shanlin Liu,Karen Meusemann,Ralph S. Peters,Alexander Donath,Christoph Mayer,Paul B. Frandsen,Jessica L. Ware,Tomas Flouri,Rolf G. Beutel,Oliver Niehuis,Malte Petersen,Fernando Izquierdo-Carrasco,Torsten Wappler,Jes Rust,Andre J. Aberer,Ulrike Aspöck,Ulrike Aspöck,Horst Aspöck,Daniela Bartel,Alexander Blanke,Simon Berger,Alexander Böhm,Thomas R. Buckley,Brett Calcott,Junqing Chen,Frank Friedrich,Makiko Fukui,Mari Fujita,Carola Greve,Peter Grobe,Shengchang Gu,Ying Huang,Lars S. Jermiin,Akito Y. Kawahara,Lars Krogmann,Martin Kubiak,Robert Lanfear,Robert Lanfear,Robert Lanfear,Harald Letsch,Yiyuan Li,Zhenyu Li,Jiguang Li,Haorong Lu,Ryuichiro Machida,Yuta Mashimo,Pashalia Kapli,Pashalia Kapli,Duane D. McKenna,Guanliang Meng,Yasutaka Nakagaki,José Luis Navarrete-Heredia,Michael Ott,Yanxiang Ou,Günther Pass,Lars Podsiadlowski,Hans Pohl,Björn M. von Reumont,Kai Schütte,Kaoru Sekiya,Shota Shimizu,Adam Slipinski,Alexandros Stamatakis,Alexandros Stamatakis,Wenhui Song,Xu Su,Nikolaus U. Szucsich,Meihua Tan,Xuemei Tan,Min Tang,Jingbo Tang,Gerald Timelthaler,Shigekazu Tomizuka,Michelle D. Trautwein,Xiaoli Tong,Toshiki Uchifune,Manfred Walzl,Brian M. Wiegmann,Jeanne Wilbrandt,Benjamin Wipfler,Thomas K. F. Wong,Qiong Wu,Gengxiong Wu,Yinlong Xie,Shenzhou Yang,Qing Yang,David K. Yeates,Kazunori Yoshizawa,Qing Zhang,Rui Zhang,Wenwei Zhang,Yunhui Zhang,Jing Zhao,Chengran Zhou,Lili Zhou,Tanja Ziesmann,Shijie Zou,Yingrui Li,Xun Xu,Yong Zhang,Huanming Yang,Jian Wang,Jun Wang,Karl M. Kjer,Xin Zhou +105 more
TL;DR: The phylogeny of all major insect lineages reveals how and when insects diversified and provides a comprehensive reliable scaffold for future comparative analyses of evolutionary innovations among insects.
Journal ArticleDOI
The oyster genome reveals stress adaptation and complexity of shell formation
Guofan Zhang,Xiaodong Fang,Ximing Guo,Li Li,Ruibang Luo,Fei Xu,Pengcheng Yang,Linlin Zhang,Xiaotong Wang,Haigang Qi,Zhiqiang Xiong,Huayong Que,Yinlong Xie,Peter W. H. Holland,Jordi Paps,Yabing Zhu,Fucun Wu,Yuanxin Chen,Jiafeng Wang,Chunfang Peng,Jie Meng,Lan Yang,Jun Liu,Bo Wen,Na Zhang,Zhiyong Huang,Qihui Zhu,Yue Feng,Andrew S. Mount,Dennis Hedgecock,Zhe Xu,Yunjie Liu,Tomislav Domazet-Lošo,Yishuai Du,Xiaoqing Sun,Shoudu Zhang,Binghang Liu,Peizhou Cheng,Xuanting Jiang,Juan Li,Dingding Fan,Wei Wang,Wenjing Fu,Tong Wang,Bo Wang,Jibiao Zhang,Zhiyu Peng,Yingxiang Li,Na Li,Jinpeng Wang,Maoshan Chen,Yan He,Fengji Tan,Xiaorui Song,Qiumei Zheng,Ronglian Huang,Hailong Yang,Du Xuedi,Li Chen,Mei Yang,Patrick M. Gaffney,Shan Wang,Longhai Luo,Zhicai She,Yao Ming,Huang Wen,Shu Zhang,Baoyu Huang,Yong Zhang,Tao Qu,Peixiang Ni,Guoying Miao,Junyi Wang,Qiang Wang,Christian E. W. Steinberg,Haiyan Wang,Ning Li,Lumin Qian,Guojie Zhang,Yingrui Li,Huanming Yang,Xiao Liu,Jian Wang,Ye Yin,Jun Wang +84 more
TL;DR: The sequencing and assembly of the oyster genome using short reads and a fosmid-pooling strategy and transcriptomes of development and stress response and the proteome of the shell are reported, showing that shell formation in molluscs is more complex than currently understood and involves extensive participation of cells and their exosomes.
Journal ArticleDOI
Whole-genome analyses resolve early branches in the tree of life of modern birds
Erich D. Jarvis,Siavash Mirarab,Andre J. Aberer,Bo Li,Bo Li,Bo Li,Peter Houde,Cai Li,Cai Li,Simon Y. W. Ho,Brant C. Faircloth,Benoit Nabholz,Jason T. Howard,Alexander Suh,Claudia C. Weber,Rute R. da Fonseca,Jianwen Li,Fang Zhang Zhang,Hui Li,Long Zhou,Nitish Narula,Nitish Narula,Liang Liu,Ganesh Ganapathy,Bastien Boussau,Shamsuzzoha Bayzid,Volodymyr Zavidovych,Sankar Subramanian,Toni Gabaldón,Salvador Capella-Gutierrez,Jaime Huerta-Cepas,Bhanu Rekepalli,Bhanu Rekepalli,Kasper Munch,Mikkel H. Schierup,Bent E. K. Lindow,Wesley C. Warren,David A. Ray,Richard E. Green,Michael William Bruford,Xiangjiang Zhan,Xiangjiang Zhan,Andrew Dixon,Shengbin Li,Ning Li,Yinhua Huang,Elizabeth P. Derryberry,Elizabeth P. Derryberry,Mads F. Bertelsen,Frederick H. Sheldon,Robb T. Brumfield,Claudio V. Mello,Claudio V. Mello,Peter V. Lovell,Morgan Wirthlin,Maria Paula Cruz Schneider,Francisco Prosdocimi,José Alfredo Samaniego,Amhed Missael Vargas Velazquez,Alonzo Alfaro-Núñez,Paula F. Campos,Bent O. Petersen,Thomas Sicheritz-Pontén,An Pas,Thomas L. Bailey,R. Paul Scofield,Michael Bunce,David M. Lambert,Qi Zhou,Polina L. Perelman,Amy C. Driskell,Beth Shapiro,Zijun Xiong,Yongli Zeng,Shiping Liu,Zhenyu Li,Binghang Liu,Kui Wu,Jin Xiao,Xiong Yinqi,Quiemei Zheng,Yong Zhang,Huanming Yang,Jian Wang,Linnéa Smeds,Frank E. Rheindt,Michael J. Braun,Jon Fjeldså,Ludovic Orlando,F. Keith Barker,Knud A. Jønsson,Warren E. Johnson,Klaus-Peter Koepfli,Stephen J. O'Brien,David Haussler,Oliver A. Ryder,Carsten Rahbek,Eske Willerslev,Gary R. Graves,Gary R. Graves,Travis C. Glenn,John E. McCormack,Dave Burt,Hans Ellegren,Per Alström,Scott V. Edwards,Alexandros Stamatakis,David P. Mindell,Joel Cracraft,Edward L. Braun,Tandy Warnow,Tandy Warnow,Wang Jun,M. Thomas P. Gilbert,M. Thomas P. Gilbert,Guojie Zhang,Guojie Zhang +116 more
TL;DR: A genome-scale phylogenetic analysis of 48 species representing all orders of Neoaves recovered a highly resolved tree that confirms previously controversial sister or close relationships and identifies the first divergence in Neoaves, two groups the authors named Passerea and Columbea.