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Xueyan Shen
Researcher at James Cook University
Publications - 12
Citations - 346
Xueyan Shen is an academic researcher from James Cook University. The author has contributed to research in topics: Genome & Reference genome. The author has an hindex of 5, co-authored 9 publications receiving 282 citations. Previous affiliations of Xueyan Shen include Temasek Life Sciences Laboratory.
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Journal ArticleDOI
Chromosomal-level assembly of the Asian seabass genome using long sequence reads and multi-layered scaffolding
Shubha Vij,Heiner Kuhl,Inna S. Kuznetsova,Inna S. Kuznetsova,Aleksey Komissarov,Andrey A. Yurchenko,Peter van Heusden,Siddharth Singh,Natascha May Thevasagayam,Sai Rama Sridatta Prakki,Kathiresan Purushothaman,Jolly M. Saju,Junhui Jiang,Stanley Kimbung Mbandi,Mario Jonas,Amy Hin Yan Tong,Sarah Mwangi,Doreen Lau,Si Yan Ngoh,Woei Chang Liew,Xueyan Shen,Lawrence S. Hon,James P Drake,Matthew Boitano,Richard Hall,Chen-Shan Chin,Ramkumar Lachumanan,Jonas Korlach,Vladimir A. Trifonov,Marsel R. Kabilov,Alexey E. Tupikin,Darrell Green,Simon Moxon,Tyler Garvin,Fritz J. Sedlazeck,Fritz J. Sedlazeck,Gregory Vurture,Gopikrishna Gopalapillai,Vinaya Kumar Katneni,Tansyn Noble,Vinod Scaria,Sridhar Sivasubbu,Dean R. Jerry,Stephen J. O'Brien,Stephen J. O'Brien,Michael C. Schatz,Michael C. Schatz,Tamas Dalmay,Stephen Turner,Si Lok,Alan Christoffels,László Orbán,László Orbán,László Orbán +53 more
TL;DR: The quality of the Asian seabass genome assembly far exceeds that of any other fish species, and will serve as a new standard for fish genomics.
Journal ArticleDOI
The Asian arowana (Scleropages formosus) genome provides new insights into the evolution of an early lineage of teleosts.
Chao Bian,Yinchang Hu,Vydianathan Ravi,Inna S. Kuznetsova,Inna S. Kuznetsova,Xueyan Shen,Xidong Mu,Ying Sun,Xinxin You,Jia Li,Xiaofeng Li,Ying Qiu,Boon-Hui Tay,Natascha May Thevasagayam,Aleksey Komissarov,Vladimir A. Trifonov,Vladimir A. Trifonov,Marsel R. Kabilov,Alexey E. Tupikin,Jianren Luo,Yi Liu,Hongmei Song,Chao Liu,Xuejie Wang,Dangen Gu,Yexin Yang,Wujiao Li,Gianluca Polgar,Guangyi Fan,Peng Zeng,He Zhang,Zijun Xiong,Zhujing Tang,Chao Peng,Zhiqiang Ruan,Hui Yu,Jieming Chen,Mingjun Fan,Yu Huang,Min Wang,Xiaomeng Zhao,Guojun Hu,Huanming Yang,Jian Wang,Jun Wang,Xun Xu,Linsheng Song,Gangchun Xu,Pao Xu,Junmin Xu,Stephen J. O'Brien,Stephen J. O'Brien,László Orbán,László Orbán,László Orbán,Byrappa Venkatesh,Qiong Shi +56 more
TL;DR: A potential heterogametic sex chromosome is identified in the female arowana karyotype, suggesting that the sex is determined by a ZW/ZZ sex chromosomal system, and differential gene expression among three varieties provides insights into the genetic basis of colour variation.
Journal ArticleDOI
The first transcriptome and genetic linkage map for Asian arowana.
Xueyan Shen,Hsiao Yuen Kwan,Natascha May Thevasagayam,Sai Rama Sridatta Prakki,Inna S. Kuznetsova,Si Yan Ngoh,Si Yan Ngoh,Z. Lim,F. Feng,A. Chang,László Orbán,László Orbán,László Orbán +12 more
TL;DR: The present study aimed to create the first transcriptome by Roche 454 pyrosequencing of Asian arowana brain and gonad samples, identify differentially expressed genes between the two sexes and develop microsatellite (SSR) markers, and construct a first‐generation SSR‐based genetic linkage map of the species.
Journal ArticleDOI
Scale Drop Disease Virus (SDDV) and Lates calcarifer Herpes Virus (LCHV) Coinfection Downregulate Immune-Relevant Pathways and Cause Splenic and Kidney Necrosis in Barramundi Under Commercial Farming Conditions.
Jose A. Domingos,Xueyan Shen,Celestine Terence,Saengchan Senapin,Saengchan Senapin,Ha Thanh Dong,Marie R. Tan,S. Gibson-Kueh,Dean R. Jerry +8 more
TL;DR: In this article, the authors investigated the biological implications and gene expression response of barramundi in commercial farming conditions during a disease outbreak, the presence of pathogens, comparative RNAseq, and histopathology targeting multiple organs of clinically “sick” and healthy juveniles.
Journal ArticleDOI
A chromosome-level genome assembly of the Asian arowana, Scleropages formosus
Jia Li,Chao Bian,Yinchang Hu,Xidong Mu,Xueyan Shen,Vydianathan Ravi,Inna S. Kuznetsova,Inna S. Kuznetsova,Ying Sun,Xinxin You,Ying Qiu,Xinhui Zhang,Hui Yu,Yu Huang,Pao Xu,Ruobo Gu,Junmin Xu,László Orbán,Byrappa Venkatesh,Qiong Shi +19 more
TL;DR: This work generated a chromosome-level genome assembly of the golden arowana, on basis of the genetic linkage map constructed with the restriction site-associated DNA sequencing (RAD-seq), and annotated 22,016, 21,256 and 21,524 protein-coding genes in the genome assemblies of golden, red and green varieties respectively.