Y
Yuri Grechkin
Researcher at Lawrence Berkeley National Laboratory
Publications - 9
Citations - 4053
Yuri Grechkin is an academic researcher from Lawrence Berkeley National Laboratory. The author has contributed to research in topics: IMG & Bacillus cereus. The author has an hindex of 8, co-authored 9 publications receiving 3875 citations.
Papers
More filters
Journal ArticleDOI
IMG: the integrated microbial genomes database and comparative analysis system
Victor M. Markowitz,I-Min A. Chen,Krishna Palaniappan,Ken Chu,Ernest Szeto,Yuri Grechkin,Anna Ratner,Biju Jacob,Jinghua Huang,Peter L. Williams,Marcel Huntemann,Iain Anderson,Konstantinos Mavromatis,Natalia Ivanova,Nikos C. Kyrpides +14 more
TL;DR: The Integrated Microbial Genomes system serves as a community resource for comparative analysis of publicly available genomes in a comprehensive integrated context and provides tools and viewers for analyzing and reviewing the annotations of genes and genomes inA comparative context.
Journal ArticleDOI
Genome sequence of Bacillus cereus and comparative analysis with Bacillus anthracis
Natalia Ivanova,Alexei Sorokin,Iain Anderson,Nathalie Galleron,Benjamin Candelon,Vinayak Kapatral,Anamitra Bhattacharyya,Gary Reznik,Natalia Mikhailova,Alla Lapidus,Lien Chu,Michael Mazur,Eugene Goltsman,Niels Bent Larsen,Mark D'Souza,Theresa L. Walunas,Yuri Grechkin,Gordon D. Pusch,Robert Haselkorn,Michael Fonstein,S. Dusko Ehrlich,Ross Overbeek,Nikos C. Kyrpides +22 more
TL;DR: The sequencing and analysis of the type strain B. cereus ATCC 14579 together with the gapped genome of B. anthracis A2012 enables the comparative analysis to clarify the phylogeny of the cereus group, and the latter to determine plasmid-independent species-specific markers.
Journal ArticleDOI
Experimental Determination and System Level Analysis of Essential Genes in Escherichia coli MG1655
Svetlana Gerdes,Michael D. Scholle,James W. Campbell,Gábor Balázsi,Erzsébet Ravasz,Matthew D. Daugherty,A. L. Somera,Nikos C. Kyrpides,Iain Anderson,Mikhail S. Gelfand,A. Bhattacharya,Vinayak Kapatral,Mark D'Souza,Mark V. Baev,Yuri Grechkin,Faika Mseeh,Michael Fonstein,Ross Overbeek,Albert-László Barabási,Zoltán N. Oltvai,Andrei L. Osterman +20 more
TL;DR: A genetic footprinting technique is used for a genome-wide assessment of genes required for robust aerobic growth of Escherichia coli in rich media to identify 620 genes as essential and 3,126 genes as dispensable for growth under these conditions.
Journal ArticleDOI
IMG/M: a data management and analysis system for metagenomes
Victor M. Markowitz,Natalia Ivanova,Ernest Szeto,Krishna Palaniappan,Ken Chu,Daniel Dalevi,I-Min A. Chen,Yuri Grechkin,Inna Dubchak,Iain Anderson,Athanasios Lykidis,Konstantinos Mavromatis,Philip Hugenholtz,Nikos C. Kyrpides +13 more
TL;DR: IMG/M as mentioned in this paper is a data management and analysis system for microbial community genomes (metagenomes) hosted at the Department of Energy's (DOE) Joint Genome Institute (JGI).
Journal ArticleDOI
The integrated microbial genomes system: an expanding comparative analysis resource
Victor Markowitz,I-Min A. Chen,Krishna Palaniappan,Ken Chu,Ernest Szeto,Yuri Grechkin,Anna Ratner,Iain Anderson,Athanasios Lykidis,Konstantinos Mavromatis,Natalia Ivanova,Nikos C. Kyrpides +11 more
TL;DR: The integrated microbial genomes (IMG) system as mentioned in this paper is a community resource for comparative analysis of publicly available genomes in a comprehensive integrated context, containing both draft and complete microbial genomes.