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TL;DR: Over 1.2 million previously unknown genes represented in these samples, including more than 782 new rhodopsin-like photoreceptors are identified, suggesting substantial oceanic microbial diversity.
Abstract: We have applied “whole-genome shotgun sequencing” to microbial populations collected en masse on tangential flow and impact filters from seawater samples collected from the Sargasso Sea near Bermuda. A total of 1.045 billion base pairs of nonredundant sequence was generated, annotated, and analyzed to elucidate the gene content, diversity, and relative abundance of the organisms within these environmental samples. These data are estimated to derive from at least 1800 genomic species based on sequence relatedness, including 148 previously unknown bacterial phylotypes. We have identified over 1.2 million previously unknown genes represented in these samples, including more than 782 new rhodopsin-like photoreceptors. Variation in species present and stoichiometry suggests substantial oceanic microbial diversity. Microorganisms are responsible for most of the biogeochemical cycles that shape the environment of Earth and its oceans. Yet, these organisms are the least well understood on Earth, as the ability to study and understand the metabolic potential of microorganisms has been hampered by the inability to generate pure cultures. Recent studies have begun to explore environ
4,210 citations
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Richard A. Gibbs1, George M. Weinstock1, Michael L. Metzker1, Donna M. Muzny1 +239 more•Institutions (35)
TL;DR: This first comprehensive analysis of the genome sequence of the Brown Norway (BN) rat strain is reported, which is the third complete mammalian genome to be deciphered, and three-way comparisons with the human and mouse genomes resolve details of mammalian evolution.
Abstract: The laboratory rat (Rattus norvegicus) is an indispensable tool in experimental medicine and drug development, having made inestimable contributions to human health. We report here the genome sequence of the Brown Norway (BN) rat strain. The sequence represents a high-quality 'draft' covering over 90% of the genome. The BN rat sequence is the third complete mammalian genome to be deciphered, and three-way comparisons with the human and mouse genomes resolve details of mammalian evolution. This first comprehensive analysis includes genes and proteins and their relation to human disease, repeated sequences, comparative genome-wide studies of mammalian orthologous chromosomal regions and rearrangement breakpoints, reconstruction of ancestral karyotypes and the events leading to existing species, rates of variation, and lineage-specific and lineage-independent evolutionary events such as expansion of gene families, orthology relations and protein evolution.
1,964 citations
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Alternatives1, John Innes Centre2, University of Bonn3, University of North Carolina at Chapel Hill4, University of Wisconsin-Madison5, University of Utah6, University of Southern California7, University of Edinburgh8, University of Warwick9, Harvard University10, University College Cork11, University of Queensland12, University of Hertfordshire13, University of Potsdam14, University of California, San Diego15, Goethe University Frankfurt16, University of California, San Francisco17, University of Delaware18, Uppsala University19, Medical University of Vienna20, J. Craig Venter Institute21, University of Hawaii at Manoa22, Leibniz Association23, University of Iowa24, University of Aberdeen25, Georgia Institute of Technology26, University of California, Berkeley27, University of Groningen28, Princeton University29, University of Marburg30, University of Illinois at Urbana–Champaign31, Saarland University32, Norwegian University of Life Sciences33, Massey University34, Toyama Prefectural University35, ETH Zurich36, University of Saskatchewan37, Rutgers University38, Scripps Research Institute39, University of Helsinki40, Texas A&M University41, National Institutes of Health42, Technical University of Berlin43, University of Otago44, University of Cambridge45, University of Alberta46, Michigan State University47, Hofstra University48
TL;DR: This review presents recommended nomenclature for the biosynthesis of ribosomally synthesized and post-translationally modified peptides (RiPPs), a rapidly growing class of natural products.
1,560 citations
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TL;DR: This article developed an empirically grounded definition of social capital in terms of participation in networks, reciprocity, trust, social norms, the commons, and social agency using a questionnaire containing 68 potential items.
Abstract: This article develops an empirically grounded definition of social capital. Drawing on the work of Coleman and Putnam and others, the article discusses social capital in terms of participation in networks, reciprocity, trust, social norms, the commons, and social agency. Potential items to measure these elements were developed in an empirical study. A questionnaire containing 68 potential items was administered to approximately 1,200 adults in five Australian communities: two rural communities, two outer metropolitan areas, and one inner-city area of Sydney. The responses were subjected to extensive statistical analysis involving a hierarchical factor analysis, which identified a single general underlying factor and eight orthogonal specific factors, accounting for 49% of the variance. Three of the specific factors identified were community participation, agency, and trust. The five communities differed significantly in terms of the general and specific factors.
1,235 citations
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TL;DR: In this paper, a new reaction pathway for converting glycerol to propylene glycol via an intermediate was validated by isolating the acetol intermediate, and the results showed that the yield of glycerols increased with decreasing water content.
Abstract: Hydrogenolysis of glycerol to propylene glycol was performed using nickel, palladium, platinum, copper, and copper-chromite catalysts. The effects of temperature, hydrogen pressure, initial water content, choice of catalyst, catalyst reduction temperature, and the amount of catalyst were evaluated. At temperatures above 200 °C and hydrogen pressure of 200 psi, the selectivity to propylene glycol decreased due to excessive hydrogenolysis of the propylene glycol. At 200 psi and 200 °C the pressures and temperaures were significantly lower than those reported in the literature while maintaining high selectivities and good conversions. The yield of propylene glycol increased with decreasing water content. A new reaction pathway for converting glycerol to propylene glycol via an intermediate was validated by isolating the acetol intermediate.
932 citations
Authors
Showing all 4620 results
Name | H-index | Papers | Citations |
---|---|---|---|
Meng Xiao | 109 | 1006 | 62332 |
J. Craig Venter | 97 | 214 | 96263 |
Thomas Hartung | 94 | 587 | 32498 |
Laurent D. Cohen | 94 | 417 | 42709 |
Ivo Gut | 93 | 312 | 38942 |
Marc Fontecave | 89 | 461 | 27300 |
Alim-Louis Benabid | 88 | 330 | 34249 |
Jean-Baptiste Poline | 84 | 349 | 34181 |
Edgardo D. Carosella | 81 | 280 | 19942 |
Prolay Mal | 77 | 405 | 22343 |
Martin Blackledge | 62 | 213 | 13135 |
Hui Li | 62 | 246 | 14395 |
Vincent Hayward | 61 | 327 | 12025 |
Matthias Laubenstein | 61 | 462 | 14363 |
Gilles Peltier | 61 | 157 | 10789 |