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Open AccessJournal ArticleDOI

Coordination of gene expression between organellar and nuclear genomes.

Jesse D. Woodson, +1 more
- 01 May 2008 - 
- Vol. 9, Iss: 5, pp 383-395
TLDR
Recent advances in elucidating the intracellular signalling pathways that coordinate gene expression between organelles and the nucleus are reviewed, with a focus on photosynthetic plants.
Abstract
Following the acquisition of chloroplasts and mitochondria by eukaryotic cells during endosymbiotic evolution, most of the genes in these organelles were either lost or transferred to the nucleus. Encoding organelle-destined proteins in the nucleus allows for host control of the organelle. In return, organelles send signals to the nucleus to coordinate nuclear and organellar activities. In photosynthetic eukaryotes, additional interactions exist between mitochondria and chloroplasts. Here we review recent advances in elucidating the intracellular signalling pathways that coordinate gene expression between organelles and the nucleus, with a focus on photosynthetic plants.

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Reactive oxygen species homeostasis and signalling during drought and salinity stresses

TL;DR: An overview of ROS homeostasis and signalling in response to drought and salt stresses is provided and the current understanding of ROS involvement in stress sensing, stress signalling and regulation of acclimation responses is discussed.
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Reactive oxygen species, abiotic stress and stress combination.

TL;DR: ROS is beneficial to plants during abiotic stress enabling them to adjust their metabolism and mount a proper acclimation response, as long as cells maintain high enough energy reserves to detoxify ROS.
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ROS and redox signalling in the response of plants to abiotic stress

TL;DR: In this paper, the authors provide an update on ROS and redox signalling in the context of abiotic stress responses, while addressing their role in retrograde regulation, systemic acquired acclimation and cellular coordination in plants.
Journal ArticleDOI

Sensing and responding to excess light.

TL;DR: Indirect sensing of excess light through biochemical and metabolic signals can be transduced into local responses within chloroplasts, into changes in nuclear gene expression via retrograde signaling pathways, or even into systemic responses, all of which are associated with photoacclimation.
Journal ArticleDOI

The developmental dynamics of the maize leaf transcriptome

TL;DR: A dynamic transcriptome is revealed, with transcripts for primary cell wall and basic cellular metabolism at the leaf base transitioning to transcripts for secondary cell wall biosynthesis and C4 photosynthetic development toward the tip.
References
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Journal ArticleDOI

Analysis of the genome sequence of the flowering plant Arabidopsis thaliana.

TL;DR: This is the first complete genome sequence of a plant and provides the foundations for more comprehensive comparison of conserved processes in all eukaryotes, identifying a wide range of plant-specific gene functions and establishing rapid systematic ways to identify genes for crop improvement.
Journal ArticleDOI

Extrachromosomal rDNA circles--a cause of aging in yeast.

TL;DR: It is shown that nucleolar changes in aging yeast mother cells are likely due to the accumulation of extrachromosomal rDNA circles (ERCs) in old cells and that, in fact, ERCs cause aging.
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Genome-Wide Analysis of Arabidopsis Pentatricopeptide Repeat Proteins Reveals Their Essential Role in Organelle Biogenesis

TL;DR: A detailed bioinformatic analysis of 441 members of the Arabidopsis PPR family plus genomic and genetic data on the expression, localization, and general function of many family members confirm, but massively extend, the very sparse observations previously obtained from detailed characterization of individual mutants in other organisms.
Journal ArticleDOI

The tetratricopeptide repeat: a structural motif mediating protein-protein interactions.

TL;DR: The tetratricopeptide repeat motif may represent an ancient protein-protein interaction module that has been recruited by different proteins and adapted for specific functions.
Journal ArticleDOI

Evolutionary analysis of Arabidopsis, cyanobacterial, and chloroplast genomes reveals plastid phylogeny and thousands of cyanobacterial genes in the nucleus.

TL;DR: A phylogeny of chloroplast genomes inferred from 41 proteins and 8,303 amino acids sites indicates that at least two independent secondary endosymbiotic events have occurred involving red algae and that amino acid composition bias in chloropleft proteins strongly affects plastid genome phylogeny.
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